View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12659_low_2 (Length: 590)
Name: NF12659_low_2
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Complemental strand, 49016696 - 49016157
Alignment:
| Q |
19 |
ataaccatcaacaggccactctatcatagctcgtccttggtatgtttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcc |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49016696 |
ataaccatcaacaagccactctatcatagctcgtccttggtatgtttttcttcttaggtgttaacaccacgcctacaaacccttgcatccttataaatcc |
49016597 |
T |
|
| Q |
119 |
tgcctggtctacagaagtaacggtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcac |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016596 |
tgcctggtctacagaagtaactgtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcac |
49016497 |
T |
|
| Q |
219 |
cccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttctta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016496 |
cccttctttaagtccaagcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttctta |
49016397 |
T |
|
| Q |
319 |
tacttatggattgctcccacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaatta |
418 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016396 |
tacttacggattgctcccacaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaatta |
49016297 |
T |
|
| Q |
419 |
tgtcttcaaaaagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49016296 |
tgtcttcaaaaagcctaggagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagt |
49016199 |
T |
|
| Q |
519 |
tgtaacgtagcgcataaggattccattgtatagatctaagcc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016198 |
tgtaacgtagcgcataaggattccattgtatagatctaagcc |
49016157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 63 - 563
Target Start/End: Original strand, 490102 - 490602
Alignment:
| Q |
63 |
tttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagta |
162 |
Q |
| |
|
||||||||||| || |||||| | ||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||| ||| ||| || |
|
|
| T |
490102 |
tttttcttcttaagttttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgacta |
490201 |
T |
|
| Q |
163 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagaga |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
490202 |
tcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagaga |
490301 |
T |
|
| Q |
263 |
aaagacctcgt-gaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcc |
361 |
Q |
| |
|
|||| | || | | ||||| | | |||||||||||||||| || ||| || ||||| || | ||||| ||||||||||||| ||||||||||| | |
|
|
| T |
490302 |
aaagtc-tcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttc |
490400 |
T |
|
| Q |
362 |
cccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggta |
461 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
490401 |
cccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctttactgcggta |
490500 |
T |
|
| Q |
462 |
atatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagcca |
561 |
Q |
| |
|
|||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| | ||||||||| |
|
|
| T |
490501 |
atatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgtacaagtctaagcca |
490600 |
T |
|
| Q |
562 |
ca |
563 |
Q |
| |
|
|| |
|
|
| T |
490601 |
ca |
490602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 9072257 - 9071869
Alignment:
| Q |
161 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
260 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||| |
|
|
| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
|
| Q |
261 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttc |
360 |
Q |
| |
|
|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| | || |||| ||||| | | |||||||| || |
|
|
| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattctta |
9072058 |
T |
|
| Q |
361 |
ccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggt |
460 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||||||| ||||| | |
|
|
| T |
9072057 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgat |
9071958 |
T |
|
| Q |
461 |
aatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtat |
549 |
Q |
| |
|
|||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || |||||||||||| |
|
|
| T |
9071957 |
aatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgtat |
9071869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 352 - 469
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
352 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
451 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
|
| Q |
452 |
tactacggtaatatgtga |
469 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University