View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12659_low_21 (Length: 352)
Name: NF12659_low_21
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 170 - 296
Target Start/End: Complemental strand, 22852529 - 22852403
Alignment:
| Q |
170 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaattgaatgttaatttccat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22852529 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtttttgtttgatgattatgtttatgcattgttgaattgaatgttaatttccat |
22852430 |
T |
|
| Q |
270 |
tctcatattaaggctatgtttgggaag |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22852429 |
tctcatattaaggctatgtttgggaag |
22852403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 22828050 - 22827969
Alignment:
| Q |
171 |
agaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaat |
252 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
22828050 |
agaggatgaaagatggtggaggtggttcaggtatggaaattcaaagtttttgtttgataattatgtttatgcattgttgaat |
22827969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 22852660 - 22852595
Alignment:
| Q |
39 |
agttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagggga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22852660 |
agttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagggga |
22852595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 22796897 - 22796819
Alignment:
| Q |
170 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgtt |
248 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |
|
|
| T |
22796897 |
cagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagttctagtttgataattatgtttatgcattgtt |
22796819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 22815745 - 22815663
Alignment:
| Q |
170 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgttgaat |
252 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
22815745 |
cagaggatgaaagatggtgaaggtggttcaggtatggaaattcaaagttcatgtttgataattatgtttatgtattgttgaat |
22815663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 22838490 - 22838434
Alignment:
| Q |
170 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttg |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
22838490 |
cagaggatgaaagatggtggaggtggttcaggtatggaaattcaaagttcttgtttg |
22838434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 22797028 - 22796966
Alignment:
| Q |
39 |
agttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagg |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||| | |||| ||||||| ||||| |
|
|
| T |
22797028 |
agttggtgaagaatggtggtgttgtgaaagagaaattagggtctcgaaggtgtattgatgagg |
22796966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 5621058 - 5621136
Alignment:
| Q |
170 |
cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgattatgtttatgcattgtt |
248 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |
|
|
| T |
5621058 |
cagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagttctagtttgataattatgtttatgcattgtt |
5621136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 5620927 - 5620989
Alignment:
| Q |
39 |
agttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagg |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||| | |||| ||||||| ||||| |
|
|
| T |
5620927 |
agttggtgaagaatggtggtgttgtgaaagagaaattagggtctcgaaggtgtattgatgagg |
5620989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University