View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_25 (Length: 313)
Name: NF12659_low_25
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 38856303 - 38856595
Alignment:
| Q |
17 |
ctcaaattgaaagggcataaagtaggagtacaacttaaaatggaaagaaaaatcagtgaaattagaggagtttgctattgacttctaacatatagtagta |
116 |
Q |
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| T |
38856303 |
ctcaaattgaaagggcataaagtaggagtacaacttaaaatggaaagaaaaatcagtgaaattagaggagtttgctattgacttctaacatatagtagta |
38856402 |
T |
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| Q |
117 |
cttcagcagatgaaatcaaaacatatagactcaagaaccataaaacccaaaactcttcattaattaacagtcacctaacacaaatcttcacaattatagc |
216 |
Q |
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| T |
38856403 |
cttcagcagatgaaatcaaaacatatagactcaagaaccataaaacccaaaactcttc----atttacagtcacctaacacaaatcttcacaattatagc |
38856498 |
T |
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| Q |
217 |
ttttcataggcatctttttctcacatacacagaacctcttgtgagattaaaaatagaaaggagaagaaattgaaagtgatttgattttatgtattta |
313 |
Q |
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| T |
38856499 |
ttttcataggcatctttttctcacatacacagaaactcttgtgagattaaaaatagaaaggagaagaaattgaaagtgatttgattttatgtattta |
38856595 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 37360388 - 37360440
Alignment:
| Q |
123 |
cagatgaaatcaaaacatatagactcaagaaccataaaacccaaaactcttca |
175 |
Q |
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| T |
37360388 |
cagatgaaatcaaaacatatagattcatgaaccataaaacccaaaactcttca |
37360440 |
T |
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