View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_28 (Length: 303)
Name: NF12659_low_28
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_28 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 45727800 - 45728060
Alignment:
| Q |
15 |
gaagaagaacgtgtgttgggtgttggagggttagcttcaggtgagaacggagaaaaagaacgctagtggtcaacagagaagagaacgtagaagggttagg |
114 |
Q |
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| T |
45727800 |
gaagaagaacgtgtgttgggtgttcgagggttagcttcaggtgagaacggagaaaaagaacgctagtggtcaacatagaagagaacgtagaagggttagg |
45727899 |
T |
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| Q |
115 |
ctcaagtgagttggaagagaactaagaagaagaaggtagtttgagcgagtatcgagactgcgagaaacaattaaaacacggaaatagaaaaatatattgc |
214 |
Q |
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| T |
45727900 |
ctcaagtgagttggaagagaactatgaagaagaaggtagtttgagcgagtatcgagagtgcgagaaacaattaaaacacggaaatagaaaaatatattgc |
45727999 |
T |
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| Q |
215 |
gcaatatttattttttaatttgtgttgggcggttaagagcccaacatgagaatcaagtaag |
275 |
Q |
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| T |
45728000 |
gcaatatttattttttaatttgtgttgggcggttaagagcccaacatgagaatcaagtaag |
45728060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 45734279 - 45734417
Alignment:
| Q |
13 |
gagaagaagaacgtgtgttgggtgttggagggttagcttcaggtgagaacggagaaaaagaacgctagtggtcaacagagaagagaacgtagaagggtta |
112 |
Q |
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| T |
45734279 |
gagaaaaagaatgagtgttgggtgttgaagggttgtcttcaggtgagaacggtgaaaaagaatgacagtggtggatggagaagagaacatagaagggtta |
45734378 |
T |
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| Q |
113 |
ggctcaagtgagttggaagagaactaagaagaagaaggt |
151 |
Q |
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| T |
45734379 |
ggttcaagtgagttggaagagaactgagaagaagaaggt |
45734417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 82597 - 82635
Alignment:
| Q |
236 |
gtgttgggcggttaagagcccaacatgagaatcaagtaag |
275 |
Q |
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| T |
82597 |
gtgttgggcggttaagagcc-aacatgagaatcaagtaag |
82635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 18125051 - 18125089
Alignment:
| Q |
236 |
gtgttgggcggttaagagcccaacatgagaatcaagtaag |
275 |
Q |
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| T |
18125051 |
gtgttgggcggttaagagcc-aacatgagaatcaagtaag |
18125089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 30031132 - 30031167
Alignment:
| Q |
236 |
gtgttgggcggttaagagcccaacatgagaatcaagt |
272 |
Q |
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| T |
30031132 |
gtgttgggcggttaagag-ccaacatgagaatcaagt |
30031167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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