View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_low_29 (Length: 289)

Name: NF12659_low_29
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_low_29
NF12659_low_29
[»] chr7 (5 HSPs)
chr7 (6-273)||(12537973-12538240)
chr7 (6-273)||(15834485-15834752)
chr7 (6-272)||(11527695-11527961)
chr7 (6-263)||(23532017-23532274)
chr7 (6-203)||(15931849-15932046)
[»] chr8 (3 HSPs)
chr8 (6-273)||(25502946-25503213)
chr8 (6-273)||(21408730-21408998)
chr8 (6-273)||(21803222-21803490)
[»] chr1 (1 HSPs)
chr1 (6-273)||(554915-555182)
[»] chr6 (1 HSPs)
chr6 (6-273)||(11695108-11695375)
[»] chr2 (1 HSPs)
chr2 (6-273)||(29603282-29603543)
[»] scaffold0443 (1 HSPs)
scaffold0443 (27-273)||(6116-6358)
[»] scaffold0074 (1 HSPs)
scaffold0074 (6-273)||(56660-56927)
[»] chr3 (4 HSPs)
chr3 (6-272)||(14565764-14566030)
chr3 (25-273)||(16083059-16083307)
chr3 (6-203)||(102969-103166)
chr3 (25-263)||(15418115-15418353)
[»] scaffold0071 (1 HSPs)
scaffold0071 (25-263)||(43885-44123)
[»] scaffold0264 (1 HSPs)
scaffold0264 (133-272)||(12484-12623)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 12538240 - 12537973
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | |||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  12538240 agaagcacaaacaatgaggagtcaaatcacccaattgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaagtgcaacagcaagaa 12538141  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |    
T  12538140 agggccgactctcatcatggcgatttggatgagccagagcctcaaccgttttcaactgaaatatggaacgctccggttcccgataactttaaaccgcctc 12538041  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||    
T  12538040 atctaccatctttcgatggaagaggcgatccttctgagcatgtaaccgtcttcaacactcgaatgtcc 12537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 15834752 - 15834485
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  15834752 agaagcacagacaatgaggagtcaaatcgcccaattgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaagtgcaacagcaagaa 15834653  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | | | || ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||| |    
T  15834652 aagaccgactctcatcatggcgatttggatgagccagagcctcaaccgttttcaactgaaatatggaacgcaccggttcccgacaactttaaaccgcctc 15834553  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  15834552 atctaccatctttcgatggaagaggcgatccttctgagcatgtaaccgtcttcaacactcggatgtcc 15834485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 11527695 - 11527961
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||||| || |||| ||||||||||||||| ||||||||| |||| ||||| || ||||| ||||| ||||| ||||| |||  |||||| |||||     
T  11527695 agaagcagaaacgatgaagagtcagatcgcccagttgttggaaaagaacgaagccctactcgcttcagtggaaaccatccagcaacagcagcaacaagag 11527794  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | ||| || |||||||| |||||  ||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |||||||| || ||||| |    
T  11527795 aaggcggactctcatcacggcgagatggatgaaccagaaccccagccgttctcaactgaaatatggaacgctcctgttccagataacttcaaaccgccgc 11527894  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtc 272  Q
    |  |||||||||||||  | || || ||||| ||||| ||||| || || ||||||||  |||||||    
T  11527895 acttaccaactttcgacaggagaggtgatccatctgaacatgtaactgttttcaacaccaggatgtc 11527961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 23532274 - 23532017
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||||| || |||| ||||||||||||||| ||| ||||||||||  |||| || ||||| || || ||||| ||||| |||  |||||| |||||     
T  23532274 agaagcagaaacgatgaagagtcagatcgcccagttgatggaacagaacaaagccctactcgcttcggtggaaaccatccagcaacagcagcaacaagag 23532175  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | ||| || |||||||| |||||  ||||||||||||| || |||||||| || ||| | |||||||||||||||||||| |||||||| || | ||| |    
T  23532174 aaggcggactctcatcacggcgagctggatgaaccagaaccccagccgttctcaactaaaatatggaacgctccggttccagataacttcaaactgccgc 23532075  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacac 263  Q
    |  ||||||||||||| || ||||| ||| | ||||||||||| ||||| ||||||||    
T  23532074 acttaccaactttcgacgggaggggtgatgcatctgagcatgtaaccgttttcaacac 23532017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 15932046 - 15931849
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||||| ||  ||| ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| ||||| |||   ||||  || ||     
T  15932046 agaagcagaaacggtgaagagtcagatcgcccagttgttggaacagaacgaagctctactcgcctcggtggaaaccatccagcaacaacagctacaggag 15931947  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcc 203  Q
    | ||| || |||||||| |||||| ||||||| ||||| || || ||||| ||  |||| || ||||||||||||||||| |||||||| || |||||    
T  15931946 aaggcggactctcatcacggcgatctggatgagccagaaccccaaccgttctcatctgaaatctggaacgctccggttccagataacttcaaaccgcc 15931849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 25502946 - 25503213
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  25502946 agaagcacaaacaatgaggagtcaaatcgcccaattgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaagtgcaacagcaagaa 25503045  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    ||||| || |||||||| |||||||||||||| ||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||| ||||| |    
T  25503046 agggccgactctcatcacggcgatttggatgagccagagcctcaaccgttttcaattgaaatatggaacgctccggttcccgataactttaaaccgcctc 25503145  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    | |||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||    
T  25503146 acctaccatctttcgatggaagaggcgatccttctgagcatgtaaccgtcttcaacactcgaatgtcc 25503213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 21408730 - 21408998
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | || |||| ||||||||||||||| |||||||||||||| ||||| || ||||| || || ||||||||||| ||  ||||||| |||||     
T  21408730 agaagcacaaacgatgaagagtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaactatccagcagctgcagcaacaagag 21408829  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | |||  | |||||||| |||||  |||||||||| || ||||||||||| || || || |||| ||||||||||||||| |||||||| |||||||| |    
T  21408830 aaggcgaactctcatcacggcgagctggatgaacccgaacctcagccgttctcaaccgaaatatagaacgctccggttccggataacttcaagccgccgc 21408929  T
Q  206 atctacc-aactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |  |||| ||||||| | | |||||| ||||| ||||||||||| ||||||||||||||  ||||||||    
T  21408930 acttaccaaactttcaacgaaaggggtgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 21408998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 21803222 - 21803490
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | || |||| ||||||||||||||| |||||||||||||| ||||| || ||||| || || ||||||||||| ||  ||||||| |||||     
T  21803222 agaagcacaaacgatgaagagtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaactatccagcagctgcagcaacaagag 21803321  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | |||  | |||||||| |||||  |||||||||| || ||||||||||| || || || |||| ||||||||||||||| |||||||| |||||||| |    
T  21803322 aaggcgaactctcatcacggcgagctggatgaacccgaacctcagccgttctcaaccgaaatatagaacgctccggttccggataacttcaagccgccgc 21803421  T
Q  206 atctacc-aactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |  |||| ||||||| | | |||||| ||||| ||||||||||| ||||||||||||||  ||||||||    
T  21803422 acttaccaaactttcaacgaaaggggtgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 21803490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 555182 - 554915
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| |||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  555182 agaagcatagacaatgaggagtcaaatcgcccaactgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaggtgcaacagcaagaa 555083  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | | | || ||||||||||||||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||||||||||||||||| |||||||    
T  555082 aagaccgactctcatcatggcgatttggatgagccagaacctcaaccgttttcaaccgaaatatggaacgctccggttcccgataactttaaaccgcccc 554983  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    | ||||||||||||||||||||  |||| || || |||||||| ||||||||||||||||| ||||||    
T  554982 aactaccaactttcgatggaagaagcgacccttcagagcatgtaaccgtcttcaacactcgaatgtcc 554915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 11695108 - 11695375
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | || |||| |||||| || ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  11695108 agaagcacaaacgatgaagagtcaaatagcccaattgctggaacagaatgaggcacttctcgcctcagtagaaactatccagcaagtgcagtagcaagaa 11695207  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    ||  | || |||||||| ||||||||| |||||||||||||||| ||||| ||||| || || ||||||||||||||||| |||||||| |||| |||||    
T  11695208 agaacggactctcatcacggcgatttgaatgaaccagagcctcaaccgttctcgaccgaaatttggaacgctccggttcctgataacttcaagctgcccc 11695307  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    || |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  11695308 atttaccaactttcgatgggaggggcggtccgtctgagcatgtgaccgtcttcaacactcggatgtcc 11695375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 29603543 - 29603282
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | || |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| || ||||||||      ||||||||| ||     
T  29603543 agaagcacaaacgatgaggagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcagtggagactatcca------gcagcagcaggag 29603450  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | ||| || |||||||| |||||  |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| |    
T  29603449 aaggcggactctcatcacggcgagctggatgaaccagagccccagccgttttcaactgaaatatggaacgctccggttccagataacttcaagccgccgc 29603350  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |  ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  29603349 acttaccaactttcaatggaaggggcgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 29603282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 6358 - 6116
Alignment:
Q  27 tcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaaagggctgattctcatcatggc 126  Q
    |||||||||||| |||||||||||||| |||    ||||||| || || || |||||||| ||| | ||||||||||||| ||| ||||||||||| |||    
T  6358 tcagatcgcccagttgttggaacagaacgaa----ttctcgcttcggtggagactatccagcaactacagcagcaagaaaaggcggattctcatcacggc 6263  T
Q  127 gatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgccccatctaccaactttcgatggaa 226  Q
    || ||||||||||||||||| || | |||||  || || |||||||||||||| || || |||||||| || ||||| ||  | ||||||||||||||||    
T  6262 gagttggatgaaccagagccccaactgttttaaaccgaaatatggaacgctccagtcccggataacttcaaaccgccgcacttgccaactttcgatggaa 6163  T
Q  227 ggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  6162 ggggcgatccttctgagcatgtaaccgtcttcaacactcggatgtcc 6116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 56660 - 56927
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||||| | || |||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| || |||||||| |||  ||||||||| ||     
T  56660 agaagcacaaacgatgaggagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcagtggagactatccagcaatagcagcagcaggag 56759  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | ||| || ||||||||||||||  |||| ||||||||||| || ||||| || || || |||||||||||||||||||  |||||||| |||| ||| |    
T  56760 aaggcggactctcatcatggcgagctggaggaaccagagccccaaccgttctcaaccgaaatatggaacgctccggttcaagataacttcaagctgccgc 56859  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |  ||||||| ||| |||||||||||||| | ||||||||||| ||||||||||||||  ||||||||    
T  56860 acttaccaaccttcaatggaaggggcgattcgtctgagcatgtaaccgtcttcaacaccaggatgtcc 56927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 272
Target Start/End: Complemental strand, 14566030 - 14565764
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    |||||| || || |||| |||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||  |||||| ||||||    
T  14566030 agaagctgaaacgatgaagagtcagatcgcccaattattggagcagaacgaagccctactcgcttcagtggaaaccattcagcaacagcagcaacaagaa 14565931  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcccc 205  Q
    | ||| || | |||||| |||||  |||||| |||||| || |||||||| || ||||| |||||||||||||| ||||| ||||||||||||||||| |    
T  14565930 aaggcggactgtcatcacggcgagatggatgtaccagaaccccagccgttctcaactgagatatggaacgctcccgttccggataactttaagccgccac 14565831  T
Q  206 atctaccaactttcgatggaaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtc 272  Q
    |  | || |||||||| || || || ||||| ||||| ||||| ||||| ||||||||| |||||||    
T  14565830 acttgcccactttcgacgggagaggagatccatctgaacatgtaaccgttttcaacactaggatgtc 14565764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 16083059 - 16083307
Alignment:
Q  25 agtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaaagggctgattctcatcatg 124  Q
    ||||||||||||||  |||||||||||||||||||  | |||||||| || ||||| ||||||||   ||||  ||| || ||| | || ||||||||||    
T  16083059 agtcagatcgcccagctgttggaacagaatgaagctttactcgcctcggttgaaaccatccaacagcagcagatgcaggagaggacggactctcatcatg 16083158  T
Q  125 gcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgccccatctaccaactttcgatgg 224  Q
    ||||  | |||||||| || || |||||||| ||  |||| |||||||||||||| ||||| || ||||| || ||||| || || || || ||| ||||    
T  16083159 gcgagcttgatgaaccggaaccccagccgttctcagctgaaatatggaacgctccagttccggagaacttcaaaccgccgcacctgcctaccttcaatgg 16083258  T
Q  225 aaggggcgatccctctgagcatgtgaccgtcttcaacactcggatgtcc 273  Q
    |||||||||||| ||||| |||||||| || |||||||| |||||||||    
T  16083259 aaggggcgatccgtctgaacatgtgacagtattcaacacccggatgtcc 16083307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 103166 - 102969
Alignment:
Q  6 agaagcagagacaatgaggagtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaa 105  Q
    ||||| ||| || |||| ||||||||||||||| ||| |||||||||| ||||| || ||||| ||||| ||||| || || |||  |||||| |||||     
T  103166 agaaggagaaacgatgaagagtcagatcgcccagttgctggaacagaacgaagccctgctcgcttcagtggaaaccattcagcaacagcagcaacaagag 103067  T
Q  106 agggctgattctcatcatggcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgcc 203  Q
    | ||| || |||||||| |||||  |||||||||| || || |||||||| || ||||| |||||||||||||  ||||| |||||||| || |||||    
T  103066 aaggcagactctcatcacggcgagatggatgaaccggaaccccagccgttctcaactgaaatatggaacgctcttgttccggataacttcaaaccgcc 102969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 15418115 - 15418353
Alignment:
Q  25 agtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaaagggctgattctcatcatg 124  Q
    |||||||||||||| |||||||||||||| ||||| || ||||| || || ||||| ||||| |||   ||||| || || |  || || || |  || |    
T  15418115 agtcagatcgcccagttgttggaacagaacgaagctctactcgcttcggtggaaaccatccagcaacaacagcaacaggagaaagcggactcccgccacg 15418214  T
Q  125 gcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgccccatctaccaactttcgatgg 224  Q
    ||||  ||||||| ||||| || |||||||| ||  | || |||||||||||||||||||| |||||||| || ||||| ||  | || || || || ||    
T  15418215 gcgagctggatgagccagaaccccagccgttctcagccgaaatatggaacgctccggttccagataacttcaaaccgcctcacttgcctacctttgacgg 15418314  T
Q  225 aaggggcgatccctctgagcatgtgaccgtcttcaacac 263  Q
     ||||| ||||| || || ||| ||||||||||||||||    
T  15418315 gaggggtgatccatcggaacatatgaccgtcttcaacac 15418353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 44123 - 43885
Alignment:
Q  25 agtcagatcgcccaattgttggaacagaatgaagcacttctcgcctcagtcgaaactatccaacaagtgcagcagcaagaaagggctgattctcatcatg 124  Q
    |||||||||||||| |||||||||||||| ||||| || ||||| || || ||||| ||||| |||   ||||| || || |  || || || |  || |    
T  44123 agtcagatcgcccagttgttggaacagaacgaagctctactcgcttcggtggaaaccatccagcaacaacagcaacaggagaaagcggactcccgccacg 44024  T
Q  125 gcgatttggatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgccccatctaccaactttcgatgg 224  Q
    ||||  ||||||| ||||| || |||||||| ||  | || |||||||||||||||||||| |||||||| || ||||| ||  | || || || || ||    
T  44023 gcgagctggatgagccagaaccccagccgttctcagccgaaatatggaacgctccggttccagataacttcaaaccgcctcacttgcctacctttgacgg 43924  T
Q  225 aaggggcgatccctctgagcatgtgaccgtcttcaacac 263  Q
     ||||| ||||| || || ||| ||||||||||||||||    
T  43923 gaggggtgatccatcggaacatatgaccgtcttcaacac 43885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 12623 - 12484
Alignment:
Q  133 gatgaaccagagcctcagccgttttcgactgacatatggaacgctccggttcccgataactttaagccgccccatctaccaactttcgatggaaggggcg 232  Q
    |||||||||||||| ||||| ||  |  | || |||||||| |||||||| ||  | || ||||||||||| |||||| |  |||||||||| | |||||    
T  12623 gatgaaccagagccccagcctttacccgccgagatatggaatgctccggtcccataaaattttaagccgcctcatctaacctctttcgatgggaagggcg 12524  T
Q  233 atccctctgagcatgtgaccgtcttcaacactcggatgtc 272  Q
    ||||    ||||| ||||| |||||||||||| |||||||    
T  12523 atccggtggagcacgtgactgtcttcaacactaggatgtc 12484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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