View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_30 (Length: 287)
Name: NF12659_low_30
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 14003162 - 14003050
Alignment:
| Q |
160 |
tgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatccttttgctttgatctaacatat |
259 |
Q |
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| T |
14003162 |
tgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatccttttgctttgatctaacatat |
14003063 |
T |
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| Q |
260 |
gatcctttcacag |
272 |
Q |
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| T |
14003062 |
gatcctttcacag |
14003050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 14003306 - 14003232
Alignment:
| Q |
16 |
attatatcacacactgaattgatacgttatttcatcaaaacaactttattcatatccgatcaggaaaattcatcc |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003306 |
attatatcacacactgaattgatacgttatttcatcaaaacaactttattcatatccgatcaggaaaattcatcc |
14003232 |
T |
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