View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_low_40 (Length: 249)

Name: NF12659_low_40
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_low_40
NF12659_low_40
[»] chr1 (15 HSPs)
chr1 (1-238)||(13100643-13100880)
chr1 (1-235)||(13070489-13070721)
chr1 (1-82)||(13006998-13007079)
chr1 (155-235)||(13006849-13006929)
chr1 (1-69)||(13204270-13204338)
chr1 (27-69)||(13065552-13065594)
chr1 (19-83)||(13094196-13094260)
chr1 (155-235)||(13100551-13100631)
chr1 (19-83)||(13161318-13161382)
chr1 (19-69)||(14707854-14707904)
chr1 (18-69)||(12964205-12964256)
chr1 (19-69)||(13129639-13129689)
chr1 (19-69)||(13178611-13178661)
chr1 (27-69)||(30368447-30368489)
chr1 (156-235)||(13129448-13129535)
[»] chr7 (1 HSPs)
chr7 (9-71)||(12175607-12175669)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13100880 - 13100643
Alignment:
Q  1 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctcgaactattggtgctaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13100880 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctcgaactattggtgctaca 13100781  T
Q  101 tgttgtatcttataacctattgtaattgttgctctttgtcttttgttaaacattgttatgttattctctattttggaaattatgtgtctatgtaataatc 200  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13100780 tgttgtatcttataacccagtgtaattgttgctctttgtcttttgttaaacattgttatgttattctctattttggaaattatgtgtctatgtaataatc 13100681  T
Q  201 tgctttaagttggactgtggttatattttgaagttctt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13100680 tgctttaagttggactgtggttatattttgaagttctt 13100643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 13070489 - 13070721
Alignment:
Q  1 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctct-cgaactattggtgctac 99  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||| ||| | |||| ||  |     
T  13070489 ccccaaagctttcatttgttcttcacatgaaacatggcttcaaggttaaagtcactaaaagatgcatttgactgaagtctctccgagcgattgctgacat 13070588  T
Q  100 atgttgtatcttataacctatt-gtaattgttgctctttgtcttttgttaaacattgttatgttattctctattttggaaattatgtgtctatgtaataa 198  Q
    || || | || ||||||||||| || ||||||| ||||||||       ||||||||||||||||||||||||||| || ||||| |||| |||||||||    
T  13070589 atattttctcctataacctattagtcattgttgttctttgtc-------aaacattgttatgttattctctattttagatattatttgtcaatgtaataa 13070681  T
Q  199 t---ctgctttaagttggactgtggttatattttgaagtt 235  Q
    |   ||||||||||||| ||||   |||||||||||||||    
T  13070682 taaactgctttaagttgaactgcttttatattttgaagtt 13070721  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13007079 - 13006998
Alignment:
Q  1 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctct 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||    
T  13007079 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttgactgaagtctct 13006998  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 13006929 - 13006849
Alignment:
Q  155 gttatgttattctctattttggaaattatgtgtctatgtaataatctgctttaagttggactgtggttatattttgaagtt 235  Q
    |||||||||||||||||||| | |||||| |||| ||||||||| ||||||||||||| ||| |  |||||||||||||||    
T  13006929 gttatgttattctctattttagcaattatatgtcaatgtaataaactgctttaagttgaactatttttatattttgaagtt 13006849  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13204338 - 13204270
Alignment:
Q  1 ccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||| ||| ||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||    
T  13204338 ccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcattt 13204270  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 13065552 - 13065594
Alignment:
Q  27 atgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  13065552 atgaaacatggcttgaaggtcatagtcactaaaagatgcattt 13065594  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 13094260 - 13094196
Alignment:
Q  19 ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctc 83  Q
    |||||| |||||||||||||||||||||  ||||| |||||||| |||||| || ||||||||||    
T  13094260 ttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcatttgactgaagtctctc 13094196  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 13100631 - 13100551
Alignment:
Q  155 gttatgttattctctattttggaaattatgtgtctatgtaataatctgctttaagttggactgtggttatattttgaagtt 235  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| || ||| |||||| | |  | |||||||||||||||    
T  13100631 gttatgttattctctattttagaaattatatgtcgatgtaataaactacttcaagttgaattaagtttatattttgaagtt 13100551  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 13161382 - 13161318
Alignment:
Q  19 ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctc 83  Q
    |||||| |||||||||||||||||||||  ||||| |||||||| |||||| || ||||||||||    
T  13161382 ttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcatttgactgaagtctctc 13161318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 14707904 - 14707854
Alignment:
Q  19 ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||||| |||||||||||||||||||||||||||| | ||||| |||||||    
T  14707904 ttcttcgcatgaaacatggcttgaaggtcaaagtcgccaaaaggtgcattt 14707854  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 12964205 - 12964256
Alignment:
Q  18 gttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||||||  ||||||||||| |||||||||||||||| | ||||||||||||    
T  12964205 gttcttcgtatgaaacatggtttgaaggtcaaagtcagtcaaagatgcattt 12964256  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13129689 - 13129639
Alignment:
Q  19 ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||||| |||||||||||||||||||||  ||||| |||||||| ||||||    
T  13129689 ttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcattt 13129639  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13178661 - 13178611
Alignment:
Q  19 ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    |||||| |||||||||||||||||||||  ||||| |||||||| ||||||    
T  13178661 ttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcattt 13178611  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 30368447 - 30368489
Alignment:
Q  27 atgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 69  Q
    ||||||||||||||||| ||||| || ||||||||||||||||    
T  30368447 atgaaacatggcttgaacgtcaaggttactaaaagatgcattt 30368489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 13129535 - 13129448
Alignment:
Q  156 ttatgttattctctattttg---gaaattatgtgtctatgtaataatctgct-----ttaagttggactgtggttatattttgaagtt 235  Q
    |||||||||||||||||||    |||||||||| || ||||||||| |||||     |||||||| ||||| ||||||||||||||||    
T  13129535 ttatgttattctctattttatttgaaattatgtttcaatgtaataaactgctgtaagttaagttgaactgttgttatattttgaagtt 13129448  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 12175669 - 12175607
Alignment:
Q  9 ctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaa 71  Q
    |||||| ||||| | ||||||||||||||||||||||| || ||||  |||||| ||||||||    
T  12175669 ctttctgttgttttacacatgaaacatggcttgaaggttaatgtcaaaaaaagaagcatttaa 12175607  T

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