View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_41 (Length: 247)
Name: NF12659_low_41
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 33096930 - 33096698
Alignment:
| Q |
14 |
gaaaaaacaatgaaaccttggcataaaattaaattgatttctttaataagtgatacaattcaagaggtgataaaattttaaacgtgttatgtgtgtatct |
113 |
Q |
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| T |
33096930 |
gaaaaaacaatgaaaccttggcataaaattacattgatttctttaataagtgatacaattcaagaggtgataaaattttaaatgtgttatgtgtgtatct |
33096831 |
T |
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| Q |
114 |
actagaattgttggcatgtatgccataaagtttaaaacaatatgagatacacaaaggcatgttataattaaaatgcagccagtaatatttccattccctt |
213 |
Q |
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| T |
33096830 |
actagaattgttggcatgtatg-cataaagtttaaaacaatatgagatacacaaaggcatgttataattaaaatgcagccagtaatatttccattccctt |
33096732 |
T |
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| Q |
214 |
aacactactaataaagatctcgatgtcaatattt |
247 |
Q |
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| T |
33096731 |
aacactactaataaagatctcgatgtcaatattt |
33096698 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 40743220 - 40743164
Alignment:
| Q |
186 |
atgcagccagtaatatttccattcccttaacactactaataaagatctcgatgtcaa |
242 |
Q |
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| T |
40743220 |
atgcagccagtaatatttccattcccttgacacaactaataaagatctccatgtcaa |
40743164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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