View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_42 (Length: 245)
Name: NF12659_low_42
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 35005703 - 35005519
Alignment:
| Q |
19 |
cagaaatctagggcccacccaaacgcacaaagcacagatcaaatgcatctatgcccagcacacaaaaccctactcgcgccaacaaagaatcggctccacc |
118 |
Q |
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| T |
35005703 |
cagaaatctagggcccacccaaacgcacaaagcacagatcaaatccatctatgcccagcacacaaaaccctactcgtgccaacaaagaatcggctccacc |
35005604 |
T |
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| Q |
119 |
ttccactcataaagagaacagtggtattgagtgtgtttagcaaagaaccacttccgaacaggaattggaccctatcaaccaaatg |
203 |
Q |
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| T |
35005603 |
ttccactcataaagagaacagtggtattgagtgtgtttagcaaagaaccacttccgaacaggaattggaccctatcaaccaaatg |
35005519 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 8766190 - 8766105
Alignment:
| Q |
88 |
ctactcgcgccaacaaagaatcggctccaccttccactcataaagagaacagtggtattgagtgtgtttagcaaagaaccacttcc |
173 |
Q |
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| T |
8766190 |
ctactggcgccaacaaagaattgactccaccttccactcataaaatgaacactagtgtgaagggtgtttagcaatgaaccaattcc |
8766105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 9500254 - 9500222
Alignment:
| Q |
99 |
aacaaagaatcggctccaccttccactcataaa |
131 |
Q |
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| T |
9500254 |
aacaaagaattggctccaccttccactcataaa |
9500222 |
T |
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