View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12659_low_43 (Length: 245)
Name: NF12659_low_43
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_43 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 5769043 - 5769249
Alignment:
| Q |
19 |
agtagctcttcattcaagcgcatcataagatatttcatatcatcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5769043 |
agtagctcttcattcaagcgcatcataagatatttcatatcatcttaactactcctctaacatctttgaagttcttctagatcgcaagaataagatctaa |
5769142 |
T |
|
| Q |
119 |
agtctcagcatcaatatcatatgttatatcaaaatcctccctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5769143 |
agtctcagcatcaatatcatatgttatatcaaaatcctccctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaat |
5769242 |
T |
|
| Q |
219 |
tctgctg |
225 |
Q |
| |
|
||||||| |
|
|
| T |
5769243 |
tctgctg |
5769249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 27562899 - 27563101
Alignment:
| Q |
19 |
agtagctcttcattcaagcgcatcataagatatttcatatcatcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaa |
118 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||| || ||||| | |||||||| ||||| ||||| ||| || ||| || ||| |
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|
| T |
27562899 |
agtagcttttcattcaagtgcatgataagatatttcatatcatcttacctactcctttaacatcttctaagttattctatatcacatgaactgcatgtaa |
27562998 |
T |
|
| Q |
119 |
agtctcagcatcaatatcatatgttatatcaaaatcctccctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| |
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|
| T |
27562999 |
agtctcagcatcaatatcatatgttatttgaaaatcctccttatcgtttttgttgtttattactatgaccattgatctgtattacaatgttaatgaaaat |
27563098 |
T |
|
| Q |
219 |
tct |
221 |
Q |
| |
|
||| |
|
|
| T |
27563099 |
tct |
27563101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 22142861 - 22142694
Alignment:
| Q |
59 |
catcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaaagtctcagcatcaatatcatatgttatatcaaaatcctcc |
158 |
Q |
| |
|
||||||| || ||||| | ||||||| ||||| ||||| ||| | ||| |||||||||||||||||||||||||||||||||||| | ||||| |||| |
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|
| T |
22142861 |
catcttacctactcctttaacatcttataagttattctatatcatatgaacaagatctaaagtctcagcatcaatatcatatgttatttgaaaatactcc |
22142762 |
T |
|
| Q |
159 |
ctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaattctgctgc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||| |
|
|
| T |
22142761 |
ctatcgtttttgttgtttattactatgaccatttatctgtattacaatgttaatgaaaattttgctgc |
22142694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 5829405 - 5829370
Alignment:
| Q |
19 |
agtagctcttcattcaagcgcatcataagatatttc |
54 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5829405 |
agtagctcttcattcaagtgcatcataagatatttc |
5829370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 33815336 - 33815539
Alignment:
| Q |
19 |
agtagctcttcattcaagcgcatcataagatatttcatatcatcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaa |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||| | |||||| ||||||||||||||| || ||| ||||||||| |
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|
| T |
33815336 |
agtagctcttcattcaagtgcatcataggatatttcatatcatcttacctactcctctaatatcttctaagttcttctagatcacaggaacaagatctaa |
33815435 |
T |
|
| Q |
119 |
agtctcagcatcaatatcatatgttatatcaaaatcctccctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
33815436 |
agtctcagcatcaatatcatatgttatttcaaaatcctccctatcgtttttgttttttgttactat---catttatttgtattactatgttaatgaaaat |
33815532 |
T |
|
| Q |
219 |
tctgctg |
225 |
Q |
| |
|
||||||| |
|
|
| T |
33815533 |
tctgctg |
33815539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 33874806 - 33875009
Alignment:
| Q |
19 |
agtagctcttcattcaagcgcatcataagatatttcatatcatcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaa |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| || ||||||| | |||||| ||||||||||||||| || ||| ||||||||| |
|
|
| T |
33874806 |
agtagctcttcattcaagtgcatcataggatatttcatatcatcttacctactcctctaatatcttctaagttcttctagatcacaggaacaagatctaa |
33874905 |
T |
|
| Q |
119 |
agtctcagcatcaatatcatatgttatatcaaaatcctccctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
33874906 |
agtctcagcatcaatatcatatgttatttcaaaatcctccctatcgtttttgttttttgttactat---catttatttgtattactatgttaatgaaaat |
33875002 |
T |
|
| Q |
219 |
tctgctg |
225 |
Q |
| |
|
||||||| |
|
|
| T |
33875003 |
tctgctg |
33875009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 38508490 - 38508323
Alignment:
| Q |
59 |
catcttaactcctcctcttacatcttcgaagttcttctagatcgcaagaataagatctaaagtctcagcatcaatatcatatgttatatcaaaatcctcc |
158 |
Q |
| |
|
||||||| || ||||| | |||||||| ||||| ||||| ||| | ||| |||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
38508490 |
catcttacctactcctttaacatcttctaagttattctatatcatatgaacaagatctaaagtctcagcatcaatatcatatgttatttgaaaattctcc |
38508391 |
T |
|
| Q |
159 |
ctatcgtttttgttgtttattactatgaccatttatttgtattactatgttcatgaaaattctgctgc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
38508390 |
ctatcgtttttgttgtttattactatgaccatttatttgcattacaatgttaatgaaaattctgctgc |
38508323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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