View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_44 (Length: 243)
Name: NF12659_low_44
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 35761094 - 35760889
Alignment:
| Q |
20 |
tggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35761094 |
tggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaa |
35760995 |
T |
|
| Q |
120 |
acaggttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccc |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35760994 |
acagattttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccc |
35760895 |
T |
|
| Q |
220 |
tgaact |
225 |
Q |
| |
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|||||| |
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| T |
35760894 |
tgaact |
35760889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 35786028 - 35785827
Alignment:
| Q |
24 |
gaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacag |
123 |
Q |
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||||||||||||||||||| |||||||||| ||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35786028 |
gaaaggtaatagaaggcaataagtatatgtgtcttcaccccaaagtggtaaactggaacgactctgctgtcaaagaggcatttgacaatgcaaaaaacag |
35785929 |
T |
|
| Q |
124 |
gttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccctgaa |
223 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||| ||| | |||| || ||||||||||||||||||||| | ||| ||||| |
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| T |
35785928 |
gttttgggctgagatcaacggccttccctgcaacataccattgcctgatcctaacatttacatcgacgatgtagattggaatgcaagtattgactctgaa |
35785829 |
T |
|
| Q |
224 |
ct |
225 |
Q |
| |
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|| |
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|
| T |
35785828 |
ct |
35785827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 35755936 - 35755747
Alignment:
| Q |
20 |
tggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaa |
119 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
35755936 |
tggcgaaagctaatagaagtcaagaggtatatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaagaggcattcaacaatgcaaaaa |
35755837 |
T |
|
| Q |
120 |
acaggttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaa |
209 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| || | |||||||||||||||||||||| |
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| T |
35755836 |
acaggttttgggctgagatcaacggccttccctgtgacataccattgcctgatcctaacatatacctcgatgatgtagattggaatgcaa |
35755747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 35789884 - 35789679
Alignment:
| Q |
20 |
tggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaa |
119 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
35789884 |
tggcgaaagataatagaagtcaagaaatatatgtgtctacatcccaatgtggtaaactgggacgattctgccgtcaaagaggcattcaacaatgcaaaaa |
35789785 |
T |
|
| Q |
120 |
acaggttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccc |
219 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||| |||||| |||| ||||| ||||| || ||| | |
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| T |
35789784 |
acaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcgacac |
35789685 |
T |
|
| Q |
220 |
tgaact |
225 |
Q |
| |
|
|||||| |
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|
| T |
35789684 |
tgaact |
35789679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 35799527 - 35799334
Alignment:
| Q |
20 |
tggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaa |
119 |
Q |
| |
|
||||||||| ||||||||| ||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35799527 |
tggcgaaagctaatagaagacaagaggtacatgtatatgcatcccaaagtggtaaactgggacgactctgctgtcaaagaggcattcgacaatgcaaaaa |
35799428 |
T |
|
| Q |
120 |
acaggttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgt |
213 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||||||||| |||| ||| | |||| ||||||||||||| ||||||||||| |
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| T |
35799427 |
acaggtattgggctgagatcaacggcattccctgggacataccattgcccaatcctaacatttacatagatgatgtagattcaaatgcaagtgt |
35799334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 35766571 - 35766372
Alignment:
| Q |
26 |
aaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggt |
125 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| | ||| | |||||||||||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
35766571 |
aaggtaatagaaggcaagaggtttatgtttctgcatccaacagtgatcaactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggt |
35766472 |
T |
|
| Q |
126 |
tttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccctgaact |
225 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| |||| | |||||||| |||||| |||| |
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|
| T |
35766471 |
tttgggctgatatcaacggctttccctgcgacataccattgcctgatcctaacattcacatcgacgatgtggattcaaccgcaagtgtcgaccctcaact |
35766372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 20615188 - 20615043
Alignment:
| Q |
77 |
tgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggttttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccg |
176 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||||||||||| ||||||||||| || ||||| | |||| ||| ||||||| || |||||||||| |
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|
| T |
20615188 |
tgggatgattctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcccg |
20615089 |
T |
|
| Q |
177 |
acactcacattgatgatgtagattggaatgcaagtgtggaccctga |
222 |
Q |
| |
|
||| ||||||| ||| | || |||||| | ||||| |||||||| |
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|
| T |
20615088 |
acatgtacattgacgatattgactggaattccagtgttgaccctga |
20615043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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