View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_47 (Length: 237)
Name: NF12659_low_47
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 33096597 - 33096398
Alignment:
| Q |
1 |
cttgtaaagaatggtgatgaaaaccattctctgacctgttaacttctgcagcaagaaattgagtatatttggatataaaatg---------aacaaattt |
91 |
Q |
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| T |
33096597 |
cttgtaaagaatggtgatgaaaacaattctctgacctgttaacttctgcagcaagaaattgagtatatttggatataaaatggtacttttgaacaaattt |
33096498 |
T |
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| Q |
92 |
caacttttcatctgatatgttccacaagttctgttatagaatgaaaaatgtcttggactcttggtcattctataagaaattaagcattgaaccacatata |
191 |
Q |
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| T |
33096497 |
caacttttcatctgatatgttccacaagttctgttatagaatgaaaaatgtcttggactcttggtcattctataagaaattaagcattgaaccacatata |
33096398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 33096345 - 33096313
Alignment:
| Q |
191 |
aaaaagtgggtttgtaaatcgatatatgcaaac |
223 |
Q |
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| T |
33096345 |
aaaaagtgggtttgtaaatcgatatatgcaaac |
33096313 |
T |
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