View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_50 (Length: 236)
Name: NF12659_low_50
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41811995 - 41812202
Alignment:
| Q |
14 |
caaaggaataaaaaaggcaggctgtatgtcattttctttccacatttaaaatttcaatattacatggagactaacaagtgtccgtatacccatgtttttg |
113 |
Q |
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| T |
41811995 |
caaaggaataaaaaaggcaggctgtatgtcattttctttccacatttaaaatttcaatattacgtggagactaacaagtgtccgtatacccatgtttttg |
41812094 |
T |
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| Q |
114 |
cattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatggtaatgctaaaaattaatgtatgctaagcgatctggtgg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41812095 |
cattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactttgaaatatatggtaatgctaaaaattaatgtatgctatgcgatctggtgg |
41812194 |
T |
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| Q |
214 |
taaaactt |
221 |
Q |
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|||||||| |
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| T |
41812195 |
taaaactt |
41812202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 7606407 - 7606200
Alignment:
| Q |
14 |
caaaggaataaaaaaggcaggctgtatgtcattttctttccacatttaaaatttcaatattacatggagactaacaagtgtccgtatacccatgtttttg |
113 |
Q |
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| T |
7606407 |
caaaggaataaaaaaggcaggttgtatgtcattttctttccacatttaaaatttcaatattacgtggagactaacaagtgtccgtataccgatgtttttg |
7606308 |
T |
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| Q |
114 |
cattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatggtaatgctaaaaattaatgtatgctaagcgatctggtgg |
213 |
Q |
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| T |
7606307 |
cattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatggtaatgctaaaaattaatgtatgctatgcgatctggcgg |
7606208 |
T |
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| Q |
214 |
taaaactt |
221 |
Q |
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|||||||| |
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| T |
7606207 |
taaaactt |
7606200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 29309515 - 29309592
Alignment:
| Q |
103 |
ccatgtttttgcattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatggtaatg |
180 |
Q |
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| T |
29309515 |
ccatgttttagcattgtctttttaagttattgtggactgctacaaattgtattctgcaccctgaaatatatgataatg |
29309592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 20902981 - 20902910
Alignment:
| Q |
103 |
ccatgtttttgcattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatg |
174 |
Q |
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| T |
20902981 |
ccatgttctagcattgtctttttaagttactgtggactcctacaaattgtgttctgctctctgaaatatatg |
20902910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 31448848 - 31448919
Alignment:
| Q |
103 |
ccatgtttttgcattgtcttttcatgttactgtagactgctacaaattgtgttgtgcactctgaaatatatg |
174 |
Q |
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| T |
31448848 |
ccatgttttagcattgtctttttaagttactgtggattgctacaaattgtactctgcactctgaaacatatg |
31448919 |
T |
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