View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_low_56 (Length: 202)

Name: NF12659_low_56
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_low_56
NF12659_low_56
[»] chr4 (4 HSPs)
chr4 (17-184)||(29114573-29114739)
chr4 (142-182)||(49138958-49138998)
chr4 (143-184)||(55085123-55085164)
chr4 (142-182)||(2635085-2635125)
[»] scaffold0168 (1 HSPs)
scaffold0168 (142-182)||(31748-31788)
[»] chr6 (3 HSPs)
chr6 (142-182)||(5724753-5724793)
chr6 (142-172)||(7262993-7263023)
chr6 (142-182)||(2234437-2234477)
[»] chr2 (5 HSPs)
chr2 (142-182)||(30503131-30503171)
chr2 (142-182)||(40582671-40582711)
chr2 (142-182)||(4778475-4778515)
chr2 (142-182)||(11759943-11759983)
chr2 (142-182)||(16013834-16013874)
[»] chr5 (3 HSPs)
chr5 (144-182)||(16294005-16294043)
chr5 (142-182)||(3043127-3043167)
chr5 (142-182)||(29922816-29922856)
[»] chr8 (1 HSPs)
chr8 (142-182)||(35495182-35495222)
[»] chr7 (2 HSPs)
chr7 (142-182)||(38123771-38123811)
chr7 (142-182)||(45004907-45004947)
[»] chr3 (2 HSPs)
chr3 (142-182)||(3845235-3845275)
chr3 (142-182)||(12674935-12674975)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 29114573 - 29114739
Alignment:
Q  17 caaaggtatagaaatgtaaatgctgttgtaaatctaatgtaagtatacgaggaataccccaaaattcccaccgctatctaagctattgtagtcaagtgga 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29114573 caaaggtatagaaatgtaaatgctgttgtaaatctaatgta-gtatacgaggaataccccaaaattcccaccgctatctaagctattgtagtcaagtgga 29114671  T
Q  117 aagaaatcaaataatctatgggtgacaaaattgattctagaagtgtagaattgattctaacatgttag 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29114672 aagaaatcaaataatctatgggtgacaaaattgattctagaagtgtagaattgattctaacatgttag 29114739  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 49138998 - 49138958
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  49138998 caaaattgattctagaggtgtagaattgattctgacatgtt 49138958  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 55085164 - 55085123
Alignment:
Q  143 aaaattgattctagaagtgtagaattgattctaacatgttag 184  Q
    ||||||||||||||| || ||||||||||| |||||||||||    
T  55085164 aaaattgattctagaggtatagaattgattttaacatgttag 55085123  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 2635085 - 2635125
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  2635085 caaaattgattctagaagtgtaaaattgattttgacatgtt 2635125  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 31748 - 31788
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  31748 caaaattgattctagaggtgtagaattgattctgacatgtt 31788  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 5724793 - 5724753
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  5724793 caaaattaattctagaagtgtagaattgattctgacatgtt 5724753  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 7262993 - 7263023
Alignment:
Q  142 caaaattgattctagaagtgtagaattgatt 172  Q
    |||||||||||||||||||||||||||||||    
T  7262993 caaaattgattctagaagtgtagaattgatt 7263023  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 2234437 - 2234477
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||| |||||||||| |||||| ||||||||    
T  2234437 caaaattgattctataagtgtagaactgattcaaacatgtt 2234477  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 30503131 - 30503171
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  30503131 caaaattgattttggaagtgtagaattgattctaacatgtt 30503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 40582671 - 40582711
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  40582671 caaaattgattctagaggtgtagaattgattttaacatgtt 40582711  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 4778475 - 4778515
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||| ||||||||||||||||||||||  |||||||||    
T  4778475 caaaattaattctagaagtgtagaattgatgttaacatgtt 4778515  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 11759983 - 11759943
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  11759983 caaaattgattccggaagtgtagaattgattctgacatgtt 11759943  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 16013874 - 16013834
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||| |||||||| |||||||||||||| |||||||||    
T  16013874 caaaatttattctagaggtgtagaattgattttaacatgtt 16013834  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 16294043 - 16294005
Alignment:
Q  144 aaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  16294043 aaattgattatagaagtgtagaattgattttaacatgtt 16294005  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 3043167 - 3043127
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  3043167 caaaattgattctagaggtgtagaattgattttgacatgtt 3043127  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 29922816 - 29922856
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||||||||| ||||||||||||||| | |||||||    
T  29922816 caaaattgattctagtagtgtagaattgattttgacatgtt 29922856  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 35495182 - 35495222
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||| |||||||||||||||| | |||||||    
T  35495182 caaaattgattctacaagtgtagaattgattttgacatgtt 35495222  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 38123811 - 38123771
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  38123811 caaaattgattctagagatgtagaattgattttaacatgtt 38123771  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 45004907 - 45004947
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  45004907 caaaattgattctagaggtgtagaattgattttgacatgtt 45004947  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 3845275 - 3845235
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  3845275 caaaattgattctagaggtgtagaattgattttgacatgtt 3845235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 12674935 - 12674975
Alignment:
Q  142 caaaattgattctagaagtgtagaattgattctaacatgtt 182  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  12674935 caaaattgattctggaggtgtagaattgatcctaacatgtt 12674975  T

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