View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12659_low_6 (Length: 471)

Name: NF12659_low_6
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12659_low_6
NF12659_low_6
[»] chr1 (24 HSPs)
chr1 (17-449)||(29812757-29813189)
chr1 (31-179)||(48040150-48040296)
chr1 (53-181)||(48049382-48049509)
chr1 (55-183)||(48055917-48056044)
chr1 (53-169)||(48053114-48053230)
chr1 (31-172)||(48042819-48042958)
chr1 (81-184)||(48041296-48041399)
chr1 (55-184)||(48035730-48035861)
chr1 (55-157)||(48050608-48050712)
chr1 (80-158)||(5126502-5126580)
chr1 (80-158)||(48033101-48033179)
chr1 (81-156)||(39972782-39972857)
chr1 (80-157)||(22908323-22908400)
chr1 (58-179)||(29813623-29813743)
chr1 (85-158)||(48034709-48034782)
chr1 (75-170)||(48048628-48048724)
chr1 (31-146)||(48054322-48054435)
chr1 (85-156)||(48042225-48042296)
chr1 (84-158)||(48054677-48054751)
chr1 (80-153)||(48050016-48050089)
chr1 (257-449)||(48040853-48041045)
chr1 (80-152)||(48036725-48036797)
chr1 (255-411)||(48035319-48035481)
chr1 (356-433)||(48049161-48049238)
[»] chr3 (7 HSPs)
chr3 (81-164)||(31125745-31125828)
chr3 (80-156)||(34974803-34974879)
chr3 (81-156)||(53107639-53107714)
chr3 (85-158)||(47565677-47565750)
chr3 (85-156)||(38930471-38930542)
chr3 (85-156)||(53682982-53683053)
chr3 (96-147)||(32170503-32170554)
[»] chr2 (7 HSPs)
chr2 (79-157)||(35926119-35926197)
chr2 (81-157)||(6796496-6796572)
chr2 (80-156)||(6801049-6801125)
chr2 (81-156)||(39990580-39990655)
chr2 (85-157)||(7181563-7181635)
chr2 (85-156)||(13326996-13327067)
chr2 (84-157)||(35920133-35920206)
[»] chr4 (3 HSPs)
chr4 (80-156)||(38393558-38393634)
chr4 (80-158)||(49152530-49152608)
chr4 (94-151)||(26929298-26929355)
[»] chr7 (4 HSPs)
chr7 (81-156)||(43920607-43920682)
chr7 (85-156)||(23780469-23780540)
chr7 (80-156)||(40706106-40706182)
chr7 (94-151)||(46064797-46064854)
[»] chr6 (6 HSPs)
chr6 (84-157)||(10754596-10754669)
chr6 (84-156)||(992441-992513)
chr6 (85-157)||(10750280-10750352)
chr6 (85-156)||(18613088-18613159)
chr6 (102-157)||(32678635-32678690)
chr6 (85-157)||(10748684-10748756)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 29812757 - 29813189
Alignment:
Q  17 cactgatacttattttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812757 cactgatacttattttatttgtatttgattaaaaagtattgaaaagttaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctct 29812856  T
Q  117 cgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtgaatctgttagtgagacaaaagcttaatttacaataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812857 cgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtgaatctgttagtgagacaaaagcttaatttacaataa 29812956  T
Q  217 aattatacatagtttgatttgaatgttcttttgcctaaatatatataggcaaaatatggacctctaagcatttgttaatagttttgttactagtttttca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29812957 aattatacatagtttgatttgaatgttcttttgcctaaatatatataggcaaaatatggacctctaagcatttgttaatagttttgttaatagtttttca 29813056  T
Q  317 tggtttttctctacatctagcaattgggcaccatccatatgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813057 tggtttttctctacatctagcaattgggcaccatccatatgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaa 29813156  T
Q  417 atctagatttaagcatcgtatatacaataggtg 449  Q
    |||||||||||||||||||||||||||||||||    
T  29813157 atctagatttaagcatcgtatatacaataggtg 29813189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 48040296 - 48040150
Alignment:
Q  31 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 130  Q
    |||||||||||| | |||||  |||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040296 ttatttgtatttaactaaaa--tattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 48040199  T
Q  131 gaatcataccactagaccaaatgccctgacatgcaaagttattgtttgt 179  Q
    ||||||||||||||||||||||||||||| ||| |||||| | ||||||    
T  48040198 gaatcataccactagaccaaatgccctgatatgaaaagttttagtttgt 48040150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 48049509 - 48049382
Alignment:
Q  53 tattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 152  Q
    ||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049509 tattggaaagttaacctcctaaccttcaaaa-ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 48049411  T
Q  153 gccctgacatgcaaagttattgtttgtga 181  Q
    ||||| | ||| |||||||||||||||||    
T  48049410 gcccttatatgaaaagttattgtttgtga 48049382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 55 - 183
Target Start/End: Complemental strand, 48056044 - 48055917
Alignment:
Q  55 ttgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgc 154  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48056044 ttgaaaaataaaactcctaaccttcaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgc 48055945  T
Q  155 cctgacatgcaaagttattgtttgtgaat 183  Q
    ||||  ||| |||||| ||||||||||||    
T  48055944 cctgctatgaaaagtt-ttgtttgtgaat 48055917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 48053230 - 48053114
Alignment:
Q  53 tattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 152  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48053230 tattgaaaagttaaacttctaaccttcaaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaat 48053131  T
Q  153 gccctgacatgcaaagt 169  Q
    ||||||| ||| |||||    
T  48053130 gccctgatatgaaaagt 48053114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 48042958 - 48042819
Alignment:
Q  31 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 130  Q
    |||||||||||| | ||||| ||  |||||| |||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  48042958 ttatttgtatttaactaaaatgt--tgaaaaataaaacccctaaccttcaaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaagcga 48042861  T
Q  131 gaatcataccactagaccaaatgccctgacatgcaaagttat 172  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  48042860 gaatcataccactagaccaaatgccctgatatgaaaagttat 48042819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 48041399 - 48041296
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgcaaagttattgtttgtg 180  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  48041399 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttatatgaaaagttattgtttgtg 48041300  T
Q  181 aatc 184  Q
    ||||    
T  48041299 aatc 48041296  T

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Target: chr1; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 48035861 - 48035730
Alignment:
Q  55 ttgaaaagtaaaactcctaaccttca--aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 152  Q
    ||||||| | |||||| |||||||||  ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48035861 ttgaaaatttaaactcttaaccttcacaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 48035762  T
Q  153 gccctgacatgcaaagttattgtttgtgaatc 184  Q
    ||||||| ||| ||| |||| ||| |||||||    
T  48035761 gccctgatatgaaaaattatagttagtgaatc 48035730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 48050712 - 48050608
Alignment:
Q  55 ttgaaaagtaaaactcctaaccttcaaaaa--ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 152  Q
    ||||||| |||||||||||||||||| |||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48050712 ttgaaaaataaaactcctaaccttcacaaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaat 48050613  T
Q  153 gccct 157  Q
    |||||    
T  48050612 gccct 48050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 5126580 - 5126502
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126580 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 5126502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 48033179 - 48033101
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033179 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48033101  T

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Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 39972782 - 39972857
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972782 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 22908400 - 22908323
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  22908400 aaaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 22908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 29813623 - 29813743
Alignment:
Q  58 aaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    |||||| |||||| |||||||||||| |||||| || |  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29813623 aaaagttaaactcttaaccttcaaaa-ggggcactcagcaaatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 29813721  T
Q  158 gacatgcaaagttattgtttgt 179  Q
    || ||| |||||| | ||||||    
T  29813722 gatatgaaaagttttagtttgt 29813743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 48034782 - 48034709
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034782 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48034709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 48048724 - 48048628
Alignment:
Q  75 ccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccacta-gaccaaatgccctgacatgcaaagtt 170  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  48048724 ccttcaaaagggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccctgatatgaaaagtt 48048628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 48054435 - 48054322
Alignment:
Q  31 ttatttgtatttgattaaaaagtattgaaaagtaaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 130  Q
    |||||||||||| | |||||  ||||||||||| |||||||| |||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  48054435 ttatttgtatttaactaaaa--tattgaaaagttaaactcctgaccttcgaaaagcggcattctgagaatcgaactcaggacctctcgcacccaaagcga 48054338  T
Q  131 gaatcataccactaga 146  Q
    |||||||  |||||||    
T  48054337 gaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 48042296 - 48042225
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 48054751 - 48054677
Alignment:
Q  84 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  48054751 aggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccctg 48054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 48050089 - 48050016
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 153  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  48050089 aaaatggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 449
Target Start/End: Complemental strand, 48041045 - 48040853
Alignment:
Q  257 atatataggcaaaatatggacctctaagcatttgttaatagttttgttac-----tagtttttcatggtttttctctacatctagcaattg-ggcaccat 350  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| |     || |||||||||||||||||||||||| | | | ||   ||||||    
T  48041045 atatatagccaaaatatggacgtctaagcatttgttaatagttttgtttcgttcatattttttcatggtttttctctacatcaatcgactgaaccaccat 48040946  T
Q  351 ccatatgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtg 449  Q
    |||| |||| ||||||||||| ||      | ||||||||||||||||||||||||||||| |||| ||  ||||||| |||| ||| |||||| ||||    
T  48040945 ccatgtgatctattctccttacta------taatagatttcctccacacatgtccaaaccagctaagtcgggatttaaccatcttatttacaattggtg 48040853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 48036797 - 48036725
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 152  Q
    |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  48036797 aaaaaggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 411
Target Start/End: Complemental strand, 48035481 - 48035319
Alignment:
Q  255 atatatataggcaaaatatggacctctaagcatttgttaatagttttgttactagtttttcatggtttttctctacatctagcaattggg-caccatcca 353  Q
    |||||||||| |||||| |||| || ||||||||||| ||||||||   || ||| ||||||| | |||||||||||||||   |||||| |||||| ||    
T  48035481 atatatatagccaaaatttggatctataagcatttgtaaatagtttcactagtaggttttcatag-ttttctctacatctactgattgggccaccattca 48035383  T
Q  354 tatgatttattctccttattacagaat------ttatagatttcctccacacatgtccaaacca 411  Q
    |||| ||||||||||||| |  ||| |      |||||||||||||||||||||||||||||||    
T  48035382 tatggtttattctccttactctagatttatagattatagatttcctccacacatgtccaaacca 48035319  T

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Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 48049238 - 48049161
Alignment:
Q  356 tgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatc 433  Q
    |||| |||||| |||| || ||||| |||||||||||| ||||||||||||||||| |||| || |||||||| ||||    
T  48049238 tgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatc 48049161  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 31125828 - 31125745
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgacatgc 164  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  31125828 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttacatgc 31125745  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 34974879 - 34974803
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974879 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 53107714 - 53107639
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53107714 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 47565677 - 47565750
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47565677 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 47565750  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 38930471 - 38930542
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 53683053 - 53682982
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53683053 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 32170554 - 32170503
Alignment:
Q  96 agaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagac 147  Q
    |||||| |||| | |||||||||||||| |||| ||||||||||||||||||    
T  32170554 agaatcaaacttgcgacctctcgcaccccaagctagaatcataccactagac 32170503  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 35926119 - 35926197
Alignment:
Q  79 caaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35926119 caaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 6796572 - 6796496
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796572 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 6796496  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 6801049 - 6801125
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6801049 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 6801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 39990655 - 39990580
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39990655 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 7181635 - 7181563
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181635 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 7181563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 13326996 - 13327067
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13326996 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 35920133 - 35920206
Alignment:
Q  84 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  35920133 aggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccct 35920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 38393558 - 38393634
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38393558 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 49152530 - 49152608
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 158  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152530 aaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 49152608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  94 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 151  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 43920682 - 43920607
Alignment:
Q  81 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43920682 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 23780540 - 23780469
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 40706182 - 40706106
Alignment:
Q  80 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40706182 aaaatggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  94 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 151  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 10754596 - 10754669
Alignment:
Q  84 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10754596 aggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 10754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 992441 - 992513
Alignment:
Q  84 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  992441 aggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 10750280 - 10750352
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccct 10750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 18613159 - 18613088
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 156  Q
    ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 32678635 - 32678690
Alignment:
Q  102 gaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccct 32678690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 10748684 - 10748756
Alignment:
Q  85 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 157  Q
    |||||||||||||||| || |||| |||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccct 10748756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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