View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12659_low_8 (Length: 450)
Name: NF12659_low_8
Description: NF12659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12659_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 27781213 - 27780900
Alignment:
| Q |
1 |
tgaaattaatataattagaagaagcatgtannnnnnnaatcaaaaagaggcagagatccccctgtgtacaagtccaaacattcaaaaggtttaaattgat |
100 |
Q |
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| T |
27781213 |
tgaaattaatataattagaagaagcatgtatttttttaatcaaaaagaggcagagatccccctgtgtataagtccaaacattcaaaaggtttaaattgat |
27781114 |
T |
|
| Q |
101 |
tttaaccttgttgcatggagtcaagattaggaatgaaaatcacattttaacattggcgttctcatcaaaagatgcaccttattttctgtcgaagttatgg |
200 |
Q |
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| T |
27781113 |
tttaaccttgttgcatggagtcaagattaggaatgaaaatcacattttaacattggcgttctcatcaaaagatgcaccttattttctgtcgaagttatgg |
27781014 |
T |
|
| Q |
201 |
gttttatataagagagaaatagtaagagcttgaatagtatcgaaaataacttgacaatacttgatgcaaaatactaaatactagcctcaatttgtagaga |
300 |
Q |
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| T |
27781013 |
gttttatataagagagaaatagtaagagcttgaatattatcgaaaataacttgacaatacttgatgcaaaatactaaatactagcctcaatttgtagaga |
27780914 |
T |
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| Q |
301 |
ttcatattcttaaa |
314 |
Q |
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|||||||||||||| |
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| T |
27780913 |
ttcatattcttaaa |
27780900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 416
Target Start/End: Complemental strand, 27794164 - 27794069
Alignment:
| Q |
311 |
taaagagttcaatttaattggtatgcgagtaaaatagtttcacacatgtattctataatgttttaccacatagatagttttaaaactaaaataggaaaat |
410 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27794164 |
taaagagttcaatttaattggtatgcaagtaaaatagtttcacacatgtattctata----------acatagatagttttaaaactaaaataggaaaat |
27794075 |
T |
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