View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_high_1 (Length: 819)
Name: NF1265_high_1
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 11 - 791
Target Start/End: Complemental strand, 40512258 - 40511468
Alignment:
| Q |
11 |
catagggagctgcgtacaaaccttaacaaattggattacattgttatttaggttgcaacaaaacaaagcattttgagtgaggnnnnnnncaagttaaatt |
110 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
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| T |
40512258 |
catagagagctgcgtaccaaccttaacaaattggattacattgttatttaggttgcaacaaaacaaatcattttgagtgaggaaaaaaacaagttaaact |
40512159 |
T |
|
| Q |
111 |
caattcctcaaccgagacgattattgaatgaataagagcaacaattcattcataagatctggtcttagttcaacctcagttctaaaagaacgttgacgga |
210 |
Q |
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| T |
40512158 |
caattcctcaaccgagacgattattgaatgaataagagcaacaattcattcataagatctggtcttagttcaacctcagttctaaaagaacgttgacgga |
40512059 |
T |
|
| Q |
211 |
taagttggtttacgaataaattttattaattggataccaatataatcannnnnnnnnnn----atatttattgatacttcatactcgaactacaacctct |
306 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40512058 |
taagttggtttacgaataaattttattcattagataccaatataatcaattttatttttttttatatttattgatacttcatactcgaactacaacctct |
40511959 |
T |
|
| Q |
307 |
tctgatgagtgaattttatctaaacagaggagagtgttgaacttgactttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagc |
406 |
Q |
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| T |
40511958 |
tttgatgagtgaattttatctaaactgaggagagtgttgaacttgatttttttggcaagtgtacatgcacacgacaatccatgtaggatgaaaattaaac |
40511859 |
T |
|
| Q |
407 |
aaccacatttagacttattcataccacacccaattacttgatcagccttgtctgtgtgaaaatgcaaacatttcttgat--atatttctaaccaacttag |
504 |
Q |
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| T |
40511858 |
aaccacatttagacttatccataccacacccaattgtttgatcagccttgtctgcgtgaaaatgcaaacatttcttgatatatatttctaaccaacttag |
40511759 |
T |
|
| Q |
505 |
accgcaccatcaacatcttgtctttgaaactatgtccttgtccaggtttatatcaaggggctagataattaattaattagctaatcttaattaaattag- |
603 |
Q |
| |
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| T |
40511758 |
accgcaacatcaacaccttgtctttgaacctatgtccttgtccgggtttatatcaaggggctcgataattaattaattagctaatcttaattaaattagt |
40511659 |
T |
|
| Q |
604 |
---nnnnnnnnacaaattagttgataaattacatattatgttttaaatttaaggatattattatcatttcaaaaataattttaattctcttcgcaatttg |
700 |
Q |
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| T |
40511658 |
tttttttttttacaaattagttgataaattacatattatgttttaaatttaaggatatttttgtcatttcaaaaataattttaattctcttcgcaatttg |
40511559 |
T |
|
| Q |
701 |
tatccacacatacaaaggaagaggagagcatacagtctttgttaacatttcttctctctttctcttaaaataaacaatatataccaaacct |
791 |
Q |
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| T |
40511558 |
tatccaagcatacaaaggaagaggagagaaaacagtctttgttaacatttcttctctctttctcttaaaataaacaatatataccaaacct |
40511468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 507
Target Start/End: Original strand, 21196554 - 21196707
Alignment:
| Q |
355 |
ttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagcct |
454 |
Q |
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||||||| ||||||||| ||||||| ||||||| | |||||||||| |||||||||||||||||||||| || |||| || |||| ||| | ||| |
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| T |
21196554 |
ttcttggaaattgtacacgcacacggtaatccatatgtgatgaaaattaagcaaccacatttagacttatttgaactacactaaactactcgattaacct |
21196653 |
T |
|
| Q |
455 |
tgtctgtgtgaaaatgcaaaca-tttcttgatatatttctaaccaacttagacc |
507 |
Q |
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| T |
21196654 |
tgtctgagagataatgcaaagagttccttaatacatttctaatcaacttagacc |
21196707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 16041147 - 16041210
Alignment:
| Q |
393 |
gatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagccttg |
456 |
Q |
| |
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| T |
16041147 |
gatgaaaattaagcaaccacatttagatttatccataccacacccaactgctcgatcaaccttg |
16041210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 340 - 444
Target Start/End: Complemental strand, 31180065 - 31179961
Alignment:
| Q |
340 |
gtgttgaacttgactttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttattcataccacacccaa |
439 |
Q |
| |
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||||||| ||||| |||||||||||||| | ||||| || |||| | || |||||||||| |||||| ||||||| | ||||| ||||||||||||| |
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| T |
31180065 |
gtgttgagcttgatcttcttggcaattgtccgcgcacatgaaaatcagtatatgatgaaaattaagcaacaacatttatatttatttataccacacccaa |
31179966 |
T |
|
| Q |
440 |
ttact |
444 |
Q |
| |
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|||| |
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| T |
31179965 |
ctact |
31179961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 503
Target Start/End: Complemental strand, 31179865 - 31179755
Alignment:
| Q |
393 |
gatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagccttgtctgtgtgaaaatg-caaacatttcttgatatattt |
491 |
Q |
| |
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|||||||||| | |||||||||||| | ||||||||||| |||||||| ||||||| ||| || || |||| |||| ||||||| ||| |||| ||| |
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| T |
31179865 |
gatgaaaattaaacaaccacatttaaatttattcatacc-gacccaattttttgatcaacctcgtttgcgtgataatgtaaaacattccttaatatgttt |
31179767 |
T |
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| Q |
492 |
ctaaccaactta |
503 |
Q |
| |
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|||||||||||| |
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| T |
31179766 |
ctaaccaactta |
31179755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 25010766 - 25010836
Alignment:
| Q |
355 |
ttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttatt |
425 |
Q |
| |
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||||| ||||| |||||||||||| ||||||| | |||||||||| |||||||||||||| ||||||| |
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| T |
25010766 |
ttcttagcaatcgtacatgcacacagtaatccatatgtgatgaaaattaagcaaccacatttaaacttatt |
25010836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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