View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_high_15 (Length: 256)
Name: NF1265_high_15
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 55360175 - 55360401
Alignment:
| Q |
1 |
cgttggatcgtgagaataattttactttagtcaacaaatctaactcgaaagtcatacaaagtacaccttgtatacaagtgattgtttgacaatgtnnnnn |
100 |
Q |
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| T |
55360175 |
cgttggatcgtgagaataattttactttagtcaacaaatctaactcaaaagtcatacaaagtacaccttgtatacaagtgattgtttgacaatgtaaaat |
55360274 |
T |
|
| Q |
101 |
nnnnnnnnnnnntcttttaacagtacatgaagatcaatctcttctaaaaatatatgaacaaatttgctagtagaagaaatgaaaggggacgagtttgaca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55360275 |
gaaaataaaaaatcttttaacagtacatgaagatcaatctcttctaaaaatatatgaacaaatttgctagtagaagaaatgaaaggggacgagtttgaca |
55360374 |
T |
|
| Q |
201 |
caaaagtagaatggattaagtgaaaca |
227 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
55360375 |
caaaagtaggatggattaagtgaaaca |
55360401 |
T |
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