View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_10 (Length: 394)
Name: NF1265_low_10
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 32063162 - 32062965
Alignment:
| Q |
16 |
atgtaggtgtcacctgtagctgcctatcggatatttcagatatgaaggtggcaaaagctgagaagaaggccacaccactaatggaggatgcaagtgtttc |
115 |
Q |
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| T |
32063162 |
atgtaggggtcacctgtagctgcctatcggatatttaagatatgaaggtggcaaaagctgagaagaaggccacaacactaatggaggatgcaagtgtttc |
32063063 |
T |
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| Q |
116 |
tgcccctcctctttctccataaactcatagtttcatttcctagggtaattagaatagttttaataaatccatcctttagtttaaagaatttatttgtaag |
215 |
Q |
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| T |
32063062 |
tgcccctcctctttctccataaactcatagtttcatttcctagggt--ttagaatagttttaataaatccatcctttagtttaaagaatttatttgtaag |
32062965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 215 - 365
Target Start/End: Complemental strand, 32062923 - 32062773
Alignment:
| Q |
215 |
gaattgagttttgtatcttgactcattttaagtaagcaactatttgaattttagacagtgtcctttactattatttatcttttatgtccatgtacaaagt |
314 |
Q |
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| T |
32062923 |
gaattgagttttgtatcttgactcattttaagtaagcaactatttgaattttagacagtgtcctttactattatttatcttttatgtccatgtacaaagt |
32062824 |
T |
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| Q |
315 |
ggactttatgatttttgaatcaatgaattaccaacactatacatatgtaag |
365 |
Q |
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| T |
32062823 |
ggactttatgatttttgaatcaatgaattaccaacactatacatatgtaag |
32062773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 32070776 - 32070601
Alignment:
| Q |
16 |
atgtaggtgtcacctgtagctgcctatcggatatttcagatatgaaggtggcaaaagctgagaagaaggccacaccactaatggaggatgcaagtgtttc |
115 |
Q |
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| T |
32070776 |
atgtaggtgtcacctatagctgcctatcggatatttaagatatgaaggtggaaagagttgagaagaaggccaccacactaatggaggatgcaagt----- |
32070682 |
T |
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| Q |
116 |
tgcccctcctctttctccataaactcatagtttcatttcctagggtaattagaatagttttaataaatccatcctttagtttaaagaatttatttgtaag |
215 |
Q |
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| T |
32070681 |
---------------tccatgaactcat-gtttcatttcctagggt--ttagaatagttttaatagatccat-ctttagtttaaacaatttatttgtaag |
32070601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 32069406 - 32069338
Alignment:
| Q |
297 |
tatgtccatgtacaaagtggactttatgatttttgaatcaatgaattaccaacactatacatatgtaag |
365 |
Q |
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| T |
32069406 |
tatgtccatgtacaaagtggactttatgatttttgaatcaatgaattaccaacactatacatttgtaag |
32069338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 32050022 - 32049826
Alignment:
| Q |
29 |
ctgtagctgcctatcggatatttcagatatgaaggtggcaaaagctgagaagaaggccacacc-act--------------aatggaggatgcaagtgtt |
113 |
Q |
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| T |
32050022 |
ctgtaggtgcctatcggatatttaagat--gaaggtggcaaaagctgagaagaaggccccaccaactgtgattgatttcacaatggaggatgcaagtgtc |
32049925 |
T |
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| Q |
114 |
tctgcccctcctctttctccataaactcatagtttcatttcctagggtaattagaatagttttaataaatcca-tcctttagtttaaagaatttatttgt |
212 |
Q |
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||||||||||||| |||||||| ||||||| ||||||||| || | | ||||||||||| ||||| ||||| | |||||||||||||||||| |||| |
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| T |
32049924 |
tctgcccctcctccttctccatgaactcat-gtttcattttct--tgaatttagaatagttgtaatacatccattattttagtttaaagaatttagttgt |
32049828 |
T |
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