View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_13 (Length: 391)
Name: NF1265_low_13
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 2441061 - 2441215
Alignment:
| Q |
153 |
ctttcattaaccttgctgtgtagtatcattatgatggtggatttgactgccattaacaagcagctcttgtgtgtcccccctcccttaagctcttctggcc |
252 |
Q |
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| T |
2441061 |
ctttcattaaccttgctgtgtagtatcattatgatggtggaattgactgccattaacaagcagttcttgtgtgtcctccctaccttaagctcttctggcc |
2441160 |
T |
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| Q |
253 |
attcattttacgacccgccacttcctacgcttccgtttgatttggtggcagagat |
307 |
Q |
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| T |
2441161 |
attcactttatgacccgccacttcctacgcttccgtttgatttggtggcagagat |
2441215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 2440788 - 2440857
Alignment:
| Q |
7 |
gcaccacagagacaattgaaaatgaacgaaggagtaataatcacatatgtaggcaaaataaaaaaggaagtg |
78 |
Q |
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| T |
2440788 |
gcaccagaaagacaattgaaaatgaatgaaggagtaataat--catatgtaggcaaaataaaaaaggaagtg |
2440857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 139
Target Start/End: Original strand, 2440980 - 2441010
Alignment:
| Q |
109 |
atggtaatcgtgtttctcacgaaacctagcc |
139 |
Q |
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| T |
2440980 |
atggtaatcgtgtttctcacgaaacctagcc |
2441010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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