View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_15 (Length: 385)
Name: NF1265_low_15
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 41782118 - 41782059
Alignment:
| Q |
309 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataattatt |
368 |
Q |
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| T |
41782118 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaattatt |
41782059 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 40519525 - 40519586
Alignment:
| Q |
308 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataattattc |
369 |
Q |
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| T |
40519525 |
tgacaccctattacatttatataccagatggtcacatcaacaatttaatgtgacaattattc |
40519586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 18163561 - 18163623
Alignment:
| Q |
308 |
tgacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgataattattcc |
370 |
Q |
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| T |
18163561 |
tgacaccctaataaatttatataccagatggccacatcaacaatttaatgtgacaatgattcc |
18163623 |
T |
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