View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_17 (Length: 335)
Name: NF1265_low_17
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 55359296 - 55359491
Alignment:
| Q |
11 |
cctcacatacttattaaataacataacaacaaatcattaagcgtatgcataaaacctctttaaactttaaccgacaacatatacaaa---aaacttgtcn |
107 |
Q |
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| T |
55359296 |
cctcacatacttattaaataacatgaaaacaaatcattaagcgtatgcataaaacctctttaaactttaactgacaacatatacaaattaaaacttgtca |
55359395 |
T |
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| Q |
108 |
nnnnnncatatacaaattaaatctttgggttaatactaccnnnnnnnnnnnntctttgggttaattaatattttccccgtcatttggatgagtttt |
203 |
Q |
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| T |
55359396 |
aaaaaacatatacaaattaaatctttgggttaatactaccagaaaaaaaaaatctttgggttaattaatattttccccgtcatttggatgagtttt |
55359491 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 55359532 - 55359613
Alignment:
| Q |
242 |
tttagatacccctttgtcgttcaaagattccaaaaacaactttaaac---tctaacagggcaacttaactgacatgatatgc |
320 |
Q |
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| T |
55359532 |
tttagatacccctttgtcgttcaaagattccaaaaacaactttaaactcatctaacggggcagcttaactgacatgacatgc |
55359613 |
T |
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