View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_18 (Length: 333)
Name: NF1265_low_18
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 318
Target Start/End: Complemental strand, 53014029 - 53013814
Alignment:
| Q |
102 |
aattagaacggggaggatcagctagaggaatatggttaaaaatctcgtctaaattataaacttattgaattagtgtttaaagtgaaaggtttttacaatg |
201 |
Q |
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| T |
53014029 |
aattagaacggggaggatcagccagaggaatatggttaaaaatctcgtctaaattataa-cttattgaattagtgtttaaagtgaaaggtttttacaatg |
53013931 |
T |
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| Q |
202 |
cggtgaatttcagtatttgatcttgtcgagatcttgagacaactgacgaatggaagaaggctccttgaatgtttggtcagcctcaaggatgagtgtatct |
301 |
Q |
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| T |
53013930 |
cggtgaatttcagtatttgatcttgtcgagatcttgagacaactgacgaatggaagaaggctccttgaatgtttggtcagcctcaaggatgagtgtatct |
53013831 |
T |
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| Q |
302 |
gcaaaagacacttagat |
318 |
Q |
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| T |
53013830 |
gcaaaagacacttagat |
53013814 |
T |
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