View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_21 (Length: 319)
Name: NF1265_low_21
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 281
Target Start/End: Complemental strand, 43256777 - 43256521
Alignment:
| Q |
24 |
tcatcaggacatgcatgtgtagagggaacttcaaataaaagagggagcgtcagagaaaagacttaatcttagagggaactggaggatttcaaaggggctg |
123 |
Q |
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| T |
43256777 |
tcatcaggacatgcatgtgtagagggaacttcaaataaaagagggagcgtcagagaaaagacttaatcttagagggaactggaggatttcaaaggggctg |
43256678 |
T |
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| Q |
124 |
cgacagagcctggttcctattaacacatattgcctcttaattttttccgctgccccatttccccaccttgtgtaaaccttcaacacctgtggccctcatg |
223 |
Q |
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| T |
43256677 |
cgacagagcctggttcctattaacacatattgcctcttaattttttccgctgccccatttccccaccttgtgtaaaccttcaacacctgtggccctcatg |
43256578 |
T |
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| Q |
224 |
tctcatgggggacaagctgctcatctggggtttattgcaacagctagggctttgtcag |
281 |
Q |
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| T |
43256577 |
tctcatgggggacaagctgctcatct-gggtttattgcaaaagcatgggcttcgtcag |
43256521 |
T |
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