View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_27 (Length: 288)
Name: NF1265_low_27
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 42008131 - 42007885
Alignment:
| Q |
28 |
caattctaagatagaatgttacactaaggtcactacactactccacttatcatatgatcataattattgacatacacatacaaataaatacaaaaccaga |
127 |
Q |
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| T |
42008131 |
caattctaagatagaatgttacactaaggtcactacactactccacttatcatatgatcataattattgacatacacatacaaataaatacaaaaccaga |
42008032 |
T |
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| Q |
128 |
attacctcaacagaataaggttttgatttttctttcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacag |
227 |
Q |
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| T |
42008031 |
attacctcaacagaataaggttttgattttgctttcttaatggtaacattcccagcagacaaagcagcttcaccgaatagagaaacagcatctttaacag |
42007932 |
T |
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| Q |
228 |
attgaataggtgaattagtgtcaatctctccaaccactgattttgtt |
274 |
Q |
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| T |
42007931 |
attgaataggtgaattagtgtcaatctctccaaccactgattttgtt |
42007885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 1243472 - 1243226
Alignment:
| Q |
28 |
caattctaagatagaatgttacactaaggtcactacactactccacttatcatatgatcataattattgacatacacatacaaataaatacaaaaccaga |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1243472 |
caattctaagatagaatgttacactaaggtcactacactactccacttatcatatgatcataattattgacatacacatacaaataaatactaaaccaga |
1243373 |
T |
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| Q |
128 |
attacctcaacagaataaggttttgatttttctttcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacag |
227 |
Q |
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| T |
1243372 |
attacctcaacagaataaggttttgattttgctttcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacag |
1243273 |
T |
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| Q |
228 |
attgaataggtgaattagtgtcaatctctccaaccactgattttgtt |
274 |
Q |
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| T |
1243272 |
attgaataggtgaattagtgtcaatctctccaaccactgaatttgtt |
1243226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 23784981 - 23784893
Alignment:
| Q |
183 |
cagacaaagcagcttcaccaaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaaccactgatttt |
271 |
Q |
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|||| |||||| |||||||||||||||| |||||||||||||| || |||| ||||| | |||||||||||||||||| ||| |||| |
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| T |
23784981 |
cagagaaagcaccttcaccaaatagagacacagcatctttaacggactgaaaaggtgggctggtgtcaatctctccaacctctggtttt |
23784893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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