View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265_low_30 (Length: 273)
Name: NF1265_low_30
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 39695706 - 39695518
Alignment:
| Q |
34 |
ataggtaatacacaaagttgatgcctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtact |
133 |
Q |
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| T |
39695706 |
ataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtact |
39695607 |
T |
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| Q |
134 |
cctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtg |
222 |
Q |
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| T |
39695606 |
cctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgttcttaagtg |
39695518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 39934412 - 39934595
Alignment:
| Q |
39 |
taatacacaaagttgatgcctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctac |
138 |
Q |
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| T |
39934412 |
taatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctac |
39934511 |
T |
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| Q |
139 |
gaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtg |
222 |
Q |
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| T |
39934512 |
gaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtg |
39934595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 39704611 - 39704427
Alignment:
| Q |
38 |
gtaatacacaaagttgatgcctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactccta |
137 |
Q |
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| T |
39704611 |
gtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactccta |
39704512 |
T |
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| Q |
138 |
cgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatcattgctgttgatgtgttcttaagtg |
222 |
Q |
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| T |
39704511 |
cgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatcttaagtg |
39704427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 39928795 - 39928943
Alignment:
| Q |
69 |
actaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaat |
168 |
Q |
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| T |
39928795 |
actaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgt |
39928894 |
T |
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| Q |
169 |
aaaaagcaatccctataagcattgaaatcattgctgttgatgtgttctt |
217 |
Q |
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| T |
39928895 |
aaaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctt |
39928943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
99 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagc |
175 |
Q |
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||||||||||| ||||| |||||||||| |||| ||||| | | ||||||| ||||| ||||||||| | |||||| |
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| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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