View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1265_low_34 (Length: 252)
Name: NF1265_low_34
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_34 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 10866476 - 10866235
Alignment:
| Q |
11 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866476 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10866377 |
T |
|
| Q |
111 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866376 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10866277 |
T |
|
| Q |
211 |
ttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10866276 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaa |
10866235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 10873829 - 10874070
Alignment:
| Q |
11 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873829 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10873928 |
T |
|
| Q |
111 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873929 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10874028 |
T |
|
| Q |
211 |
ttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10874029 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaa |
10874070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 10878900 - 10879141
Alignment:
| Q |
11 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878900 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10878999 |
T |
|
| Q |
111 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10879000 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10879099 |
T |
|
| Q |
211 |
ttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10879100 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaa |
10879141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 10883971 - 10884212
Alignment:
| Q |
11 |
taggtagcttcttcggcaagactccttgagtggttttttcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883971 |
taggtagcttcttcggcaagactccttgagtggtttttgcagcaatgtcttcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgat |
10884070 |
T |
|
| Q |
111 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884071 |
aaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctg |
10884170 |
T |
|
| Q |
211 |
ttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10884171 |
ttgagaagaaagtaggcgacggagaagaagagaccaaagaaa |
10884212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 10887948 - 10888139
Alignment:
| Q |
61 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
160 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
|
|
| T |
10887948 |
tcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
10888047 |
T |
|
| Q |
161 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10888048 |
ctgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
10888139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 61 - 252
Target Start/End: Complemental strand, 39675999 - 39675808
Alignment:
| Q |
61 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || | |||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
39675999 |
tcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga |
39675900 |
T |
|
| Q |
161 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
39675899 |
ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaa |
39675808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 252
Target Start/End: Complemental strand, 10045975 - 10045801
Alignment:
| Q |
78 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
177 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
|
|
| T |
10045975 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
10045876 |
T |
|
| Q |
178 |
ggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaa |
252 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||| |||||| |
|
|
| T |
10045875 |
ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaa |
10045801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University