View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1265_low_7 (Length: 511)
Name: NF1265_low_7
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 64 - 296
Target Start/End: Complemental strand, 50326419 - 50326187
Alignment:
| Q |
64 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326419 |
taaatgtcacaaattggaagattaaaaacaaggctaaaaatcccaacaggtttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccg |
50326320 |
T |
|
| Q |
164 |
gtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtacatgcaagtgctgcaccagtgattgctccagcaactgcactatttttctgca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326319 |
gtaatagcacattgcgcaatctgttcatgagatgtgttatctgatgtacatgcaagtgctgctccagtgattgctccagcaactgcactatttttctgca |
50326220 |
T |
|
| Q |
264 |
acagaataaataattactcaagcacatgtaata |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50326219 |
acagaataaataattactcaagcacatgtaata |
50326187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 337 - 482
Target Start/End: Complemental strand, 50326180 - 50326034
Alignment:
| Q |
337 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaa-tgtatcataaatctagttatttagaacattacccagtcatgagta |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326180 |
tattattcacaccagtgatgaagagaggcttgcccttgttccttttacaaaaaaatgtatcataaatctagttatttagaacattacccagtcatgagta |
50326081 |
T |
|
| Q |
436 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326080 |
ccacgagcttccttcatcccatatgtgagtcctgaatatagtcctgc |
50326034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 50326512 - 50326457
Alignment:
| Q |
14 |
agacaacacatttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50326512 |
agacaacacatttgaaaaagagaactacaaattcagaaagaaatagttgctaaatg |
50326457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 13202291 - 13202440
Alignment:
| Q |
114 |
tttagaatatccctgttagaagatttgcagcagttgaaatcgcagctccggtaatagcacattgcgcaatctgttcatgagaagtgttatctgatgtaca |
213 |
Q |
| |
|
||||||| |||||| | |||||||||||| ||||||| || |||||||| || ||||||||||| ||| |||||||| | | || || ||||| |
|
|
| T |
13202291 |
tttagaaaatccctttgagaagatttgcaacagttgagattgcagctccagtgatagcacattgaacaacatgttcatgtgtggagtcttccaatgtaag |
13202390 |
T |
|
| Q |
214 |
tgcaagtgctgcaccagtgattgctccagcaactgcactatttttctgca |
263 |
Q |
| |
|
|||||| | || || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
13202391 |
tgcaagggtagccccggtgattgctccagcaactgcactgtttttctgca |
13202440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University