View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1265_low_9 (Length: 395)

Name: NF1265_low_9
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1265_low_9
NF1265_low_9
[»] chr5 (1 HSPs)
chr5 (23-63)||(1814010-1814050)
[»] chr3 (3 HSPs)
chr3 (23-63)||(42547967-42548007)
chr3 (17-63)||(51047155-51047201)
chr3 (35-63)||(643174-643202)
[»] chr7 (3 HSPs)
chr7 (24-63)||(13851923-13851962)
chr7 (34-63)||(2703443-2703472)
chr7 (23-63)||(44651536-44651576)
[»] chr2 (2 HSPs)
chr2 (24-63)||(42451469-42451508)
chr2 (24-56)||(3897990-3898022)
[»] chr6 (1 HSPs)
chr6 (25-63)||(31682887-31682925)
[»] chr4 (2 HSPs)
chr4 (9-63)||(23187821-23187874)
chr4 (23-63)||(2431032-2431072)
[»] chr1 (1 HSPs)
chr1 (18-63)||(33002471-33002516)
[»] chr8 (2 HSPs)
chr8 (23-63)||(32944826-32944866)
chr8 (23-63)||(34420848-34420888)


Alignment Details
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 1814010 - 1814050
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  1814010 aatatgtaatgtttgaggttcaaatcctgaccaccacaaaa 1814050  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 42547967 - 42548007
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  42547967 aatatgtaaggtttgaggttcaaaccccggccaccacaaaa 42548007  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 51047201 - 51047155
Alignment:
Q  17 tataataatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    ||||||||||||||| ||  | |||||||||||||||||||||||||    
T  51047201 tataataatatgtaaggtccggggttcaaaccccgaccaccacaaaa 51047155  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 643202 - 643174
Alignment:
Q  35 ttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||||||||||||||||||||||||    
T  643202 ttgaggttcaaaccccgaccaccacaaaa 643174  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 13851962 - 13851923
Alignment:
Q  24 atatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  13851962 atatgtaaggttcgaggttcaaaccccgaccaccacaaaa 13851923  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 2703472 - 2703443
Alignment:
Q  34 tttgaggttcaaaccccgaccaccacaaaa 63  Q
    ||||||||||||||||||||||||||||||    
T  2703472 tttgaggttcaaaccccgaccaccacaaaa 2703443  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 44651536 - 44651576
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    ||||||||| ||||| |||||||||||| ||||||||||||    
T  44651536 aatatgtaaggtttggggttcaaaccccaaccaccacaaaa 44651576  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 42451469 - 42451508
Alignment:
Q  24 atatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  42451469 atatgtaaggtttgaggttcaaactccgaccaccacaaaa 42451508  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 3898022 - 3897990
Alignment:
Q  24 atatgtaatgtttgaggttcaaaccccgaccac 56  Q
    |||||||| ||||||||||||||||||||||||    
T  3898022 atatgtaaggtttgaggttcaaaccccgaccac 3897990  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 31682925 - 31682887
Alignment:
Q  25 tatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  31682925 tatgtaaggtttgaggttcaaaccccggccaccacaaaa 31682887  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 23187821 - 23187874
Alignment:
Q  9 gaataatatataataatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||  |||| |||||| |||||||| |||||||||||||||||||||||||    
T  23187821 gaataatgcataaaaatatgcaatgtttg-ggttcaaaccccgaccaccacaaaa 23187874  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 2431032 - 2431072
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||| || || ||||||||||||||||||||||||||||    
T  2431032 aatatgcaaggtatgaggttcaaaccccgaccaccacaaaa 2431072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33002516 - 33002471
Alignment:
Q  18 ataataatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  33002516 ataataatatgtaaagttcgaggttcgaaccccggccaccacaaaa 33002471  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 32944866 - 32944826
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||| || || ||||||||||||||||||||||||||||    
T  32944866 aatatgcaaggtctgaggttcaaaccccgaccaccacaaaa 32944826  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34420888 - 34420848
Alignment:
Q  23 aatatgtaatgtttgaggttcaaaccccgaccaccacaaaa 63  Q
    |||||| || |||||||||||||||| ||||||||||||||    
T  34420888 aatatgcaaggtttgaggttcaaacctcgaccaccacaaaa 34420848  T

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