View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266-Insertion-12 (Length: 723)
Name: NF1266-Insertion-12
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Complemental strand, 33511270 - 33510561
Alignment:
| Q |
8 |
atggaatcatcacatgggtacatgggtgcttgcttatttgttatatctcttaggtcacttttcannnnnnnnnatgatggccactataactaaagaatcc |
107 |
Q |
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| T |
33511270 |
atggaatcatcacatgggtacatgggtgcttgcttatttgttatatctcttaggtcacttttcatttttttt-atgatggccattattactaaagaatcc |
33511172 |
T |
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| Q |
108 |
agattttttgctcattcattgaacacatccgcacagttataagataagatctgtgaccctctgatcgagattggacagtatnnnnnnnnnngattatcga |
207 |
Q |
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| T |
33511171 |
agattttttgctcattcattgaacacatccacacagttataagat-----ctctgaccctctgatcgagattggacagtataaaaaaaaaagattatcga |
33511077 |
T |
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| Q |
208 |
gtttgtgatttaaaggtttaatctcgattagacaattactgatcttccaattatgtgaatgcgttcaatgaatgactatattctactatggtgctcacac |
307 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33511076 |
gtttgtgatttaaaggtttaatctcgattagataattactgatcttctaactatatgaatgcgttcaatgaatgactatattctactatggtgctcacac |
33510977 |
T |
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| Q |
308 |
atcacatgtccaactcaacttttgtttttgatccaaaattgctaacagataggaatttaatttgtcattcaaccccagaatatgtagcacttgggaccca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33510976 |
atcacatgtccaactcaacttttgtttttgatccaaaattgctaacatataggaatttaatttgtcattcaaccccagaatatgtagcacttgggaccca |
33510877 |
T |
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| Q |
408 |
ttatttactgtcatagcttttagctttttctaattattcatttattcccctttatttggacaccaaccactcaaattctactctacaaggtgaaacacat |
507 |
Q |
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| T |
33510876 |
ttatttactgtcatagcttttagctttttctaattattcatttattcccctttatttggacaccaaccactcaaattctactctacaaggtgaaacacat |
33510777 |
T |
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| Q |
508 |
cacctaagaaatgaggtaatggggtaacctttccagctagtttttaacaagaaaagcattatttcaattttgaagtcagagattgattgtataatatgta |
607 |
Q |
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| T |
33510776 |
cacctaagaaatgaggtaatggggtaacctttccagctagtttttaacaagaaaagcattatttcaattttgaagtcagagattgattgtataatatgta |
33510677 |
T |
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| Q |
608 |
aagaaacgttgggtaagatttcattcataattcgtcggtgtcttgctgcttttaggttatatccaagaaaacaagtcaaaatgtttatcctattaattag |
707 |
Q |
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| T |
33510676 |
aagaaacgttgggtaagatttcattcataattcgtcggtgtcttgctgcttttaggttatatccaagaaaacaagtcaaaatgtttatcctattaattag |
33510577 |
T |
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| Q |
708 |
aggttgaaatcattga |
723 |
Q |
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| T |
33510576 |
aggttgaaatcattga |
33510561 |
T |
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