View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266-Insertion-3 (Length: 504)
Name: NF1266-Insertion-3
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 41 - 504
Target Start/End: Complemental strand, 27432347 - 27431881
Alignment:
| Q |
41 |
atttgtcgtgtaatattaaccacaagtattttcaattattattgcagtaannnnnnnnataatttattgcgtcttgatggatatattatataggttatag |
140 |
Q |
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| T |
27432347 |
atttgtcatgtaatataaaccacaagtattttcaattattattgcagtaattttttttataatttattgcgtcttgatggatatattatttaggttatag |
27432248 |
T |
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| Q |
141 |
gttactctt-ttaagtcatgaccagcactttgttacgtcgattaataaat--ttatgtaaaaggtctcattgtagaaaatctttcataaaagccgtcttt |
237 |
Q |
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| T |
27432247 |
gttactcttcttaagtcatgaccagcactttgttacgtcgattaataaaaaattatgtaaaaggttttattgtagaaaatctttcataaaagccgtcttt |
27432148 |
T |
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| Q |
238 |
tgttaattatttaatttgtcaacaaataaaattcaaaagaatttatcaaaaagactaaaaccacagctcaactctctttctctttgttattcactatgtt |
337 |
Q |
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| T |
27432147 |
tgttaattatttaatttgtcaacaaataaaattcaaaagaatttatcaaaaagactaaaaccacaactcaactctctttctctttgttattcactatgtt |
27432048 |
T |
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| Q |
338 |
cagtgatttctctaacttgtaatcatattatattattgttaataaaccaaaccaagatcaaaattacctttccaataacgaaatattcgtttaacaacaa |
437 |
Q |
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| T |
27432047 |
cagtgatttctctaacttgtaatcatattatattattgttaataaaccaaaccaagatcaaaattacctttccaataacgaaatattcgtttaacaacaa |
27431948 |
T |
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| Q |
438 |
catcataggatctgattaaaatcttgcacatcgacatttgttgaatactgaatatcaagtctataga |
504 |
Q |
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| T |
27431947 |
catcataggatctgattaaaatcttgcacatcaacatttgttgaatactggatatcaagtctataga |
27431881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 27444266 - 27444315
Alignment:
| Q |
41 |
atttgtcgtgtaatattaaccacaagtattttcaattattattgcagtaa |
90 |
Q |
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| T |
27444266 |
atttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
27444315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 38757365 - 38757395
Alignment:
| Q |
7 |
agcttccgcttctggtttttctgcgctatca |
37 |
Q |
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| T |
38757365 |
agcttccgcttctggtttttctgcgctatca |
38757395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 30695621 - 30695651
Alignment:
| Q |
7 |
agcttccgcttctggtttttctgcgctatca |
37 |
Q |
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| T |
30695621 |
agcttccgcttctggtttttctgcgctatca |
30695651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 21847453 - 21847483
Alignment:
| Q |
7 |
agcttccgcttctggtttttctgcgctatca |
37 |
Q |
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| T |
21847453 |
agcttccgcttctggtttttctgcgctatca |
21847483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 21850543 - 21850573
Alignment:
| Q |
7 |
agcttccgcttctggtttttctgcgctatca |
37 |
Q |
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| T |
21850543 |
agcttccgcttctggtttttctgcgctatca |
21850573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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