View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266-Insertion-5 (Length: 319)
Name: NF1266-Insertion-5
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 53088533 - 53088668
Alignment:
| Q |
185 |
atttctttgtcaaggtgtagaatatatattaggtatctagatttccaaa-ctatagtactaacagagagaaattagagaatataaaatggaaatgatttt |
283 |
Q |
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| T |
53088533 |
atttctttgtcaaggtgtagaatatatattaggtatctagatttccaaaacaatagtactaacagagagaaattagagaatataaaatggaaatgatttc |
53088632 |
T |
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| Q |
284 |
aactcataagtgattttgattttccatgtttatttt |
319 |
Q |
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| T |
53088633 |
aactcataagtgattttgattttccatgtttatttt |
53088668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 53088421 - 53088533
Alignment:
| Q |
18 |
tccatttaatgtctctttttagattactatcattataagtgtctttaattatc-taca--ttcatttaacacttcattttctctctatctttccattttc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| |
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| T |
53088421 |
tccatttaatgtctctttttagattactatcattataagtgtctttaattatcatacattttcatttaacacatcattttctctctatctttaaattttc |
53088520 |
T |
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| Q |
115 |
attagttcattaa |
127 |
Q |
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| T |
53088521 |
attagttcattaa |
53088533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 14333264 - 14333406
Alignment:
| Q |
178 |
tttatttatttctttgtcaaggtgtagaatatatattaggtatctagatttc-caaactatagtactaacagagagaaattagag-aatataaaatggaa |
275 |
Q |
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| T |
14333264 |
tttatttctttctttgtcgatgtgtagaatatatattaggtgtctagatttctaaaactatagtactaacagagagaaattagagaaaaagagaatggat |
14333363 |
T |
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| Q |
276 |
atgattttaactcataagtgattttgattttccatgtttatttt |
319 |
Q |
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| T |
14333364 |
atgattttaactcacaagtgattttgatttt-catgtttatttt |
14333406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 14333160 - 14333244
Alignment:
| Q |
58 |
gtctttaattatc-tacattcatttaacacttcattttctctctatctttccattttcattagttcattaacatatcacatttat |
141 |
Q |
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| T |
14333160 |
gtctttaattatcatacattcatttaacacatccttttatcactatctttctatttccattagttcactaatatatcgcatttat |
14333244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 14333109 - 14333137
Alignment:
| Q |
18 |
tccatttaatgtctctttttagattacta |
46 |
Q |
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| T |
14333109 |
tccatttaatgtctctttttagattacta |
14333137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 21549905 - 21549939
Alignment:
| Q |
72 |
acattcatttaacacttcattttctctctatcttt |
106 |
Q |
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| T |
21549905 |
acattcattcaacacttcattttctctctatcttt |
21549939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 7566443 - 7566411
Alignment:
| Q |
72 |
acattcatttaacacttcattttctctctatct |
104 |
Q |
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| T |
7566443 |
acatttatttaacacttcattttctctctatct |
7566411 |
T |
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