View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1266-Insertion-6 (Length: 850)
Name: NF1266-Insertion-6
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 777; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 8 - 850
Target Start/End: Original strand, 251524 - 252359
Alignment:
| Q |
8 |
ttaactaccttaaccctatatttgaattgtgttaaccgcctaatttatcggcaaaattttatgtcaaatgagctgatagataaatctactagtttaaccg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
251524 |
ttaactaccttaaccctatatttgaattgtgttaaccgcctaatttatcggcaaaattttatgtcaaatgagctgattgataaatctactagtttaaccg |
251623 |
T |
|
| Q |
108 |
catattaatttagcaactcttaatctactagatttactattcggaacttacaatacaattcatcatattatacaactagcatgtgaaattgtggtagaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
251624 |
catattaatttagcaactcttaatctactagatttactattcagaacttacaatacaattcatcatattatacaactagcatgtgaaattgtggtagaat |
251723 |
T |
|
| Q |
208 |
aaaaccaagatccataccatcgtacaccataccacggttctgaaaatcatctgttggattaattccaacatgaatcctgctgaaaataggaagcatcttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
251724 |
aaaaccaagatccataccatcgtacaccacaccacggttctgaaaatcatctgttggattaattccaacatgaatcctgctgaaaataggaagcatcttc |
251823 |
T |
|
| Q |
308 |
acttaatatacaactgcatcactttcggtaactgttaccttatcaagcatcctagcatgtcgcatttatacgagtcatctggaaattttgtccactactt |
407 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
251824 |
acttaatatacaactacatcactttcagtaactgttaccttatcaagcatcctagcatgtctcatttatacgagtcatctggaaattttgtccactactt |
251923 |
T |
|
| Q |
408 |
tagtgactagcttattatcattattgaactaagataaaatgaccatatttagcatgcatgagataataatttatttgaattaaggatgagatacactaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
251924 |
tagtgactagcttattatcattattgaactaagataaaatgaccatatttagcatgcatgagataataatttatttgaattaaagatgagatacactaaa |
252023 |
T |
|
| Q |
508 |
tacttttgcaaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttcagttttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252024 |
tacttttgcaaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttcagttttg |
252123 |
T |
|
| Q |
608 |
aaaataacggactccacggcccagaactgaaaggactggttccttatgattttggatgctaagaaaggcagaagaattcgacaactggcctcctcagatt |
707 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
252124 |
aaaataacggactcaacggcccagaactgaaaggactggttccttatgattttggatgctaagaaaggcagaagaattcgacaactggcc-------atc |
252216 |
T |
|
| Q |
708 |
gctatgaagaggcttctttacttgggcagttagcagcatcggagatgtatgattgctgcaaaatgaatctaagtaggacacacatgtacgtccaaatata |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252217 |
gctatgaagaggcttctttacttgggcagttagcagtatcggagatgtatgattgctgcaaaatgaatctaagtaggacacacatgtacgtccaaatata |
252316 |
T |
|
| Q |
808 |
tgtaatagtaaataagatgatattagcatctgtctctggttgc |
850 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
252317 |
tgtaatagtaaataagatgatattagcatctgtctctggttgc |
252359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 517 - 599
Target Start/End: Original strand, 28911566 - 28911648
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgttt |
599 |
Q |
| |
|
|||||| || |||||||||| |||||||||||| |||||||||||| |||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
28911566 |
aaagtacctcacttcttagaatagtcgcccaaatttgtattcataacatttgaagctaaagtatatatttactacttgtgttt |
28911648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 764 - 812
Target Start/End: Original strand, 28911658 - 28911704
Alignment:
| Q |
764 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaa |
812 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28911658 |
tgcaaaatgaatctaagtagg--acacatgtacgtccaaatatatgtaa |
28911704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 601
Target Start/End: Original strand, 26512047 - 26512131
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgtttactacttttgtttca |
601 |
Q |
| |
|
||||||||| | |||||||| |||||||||||| |||||||||||| ||||||| || | ||||||||||||||||| ||||||| |
|
|
| T |
26512047 |
aaagtatctcatttcttagaatagtcgcccaaatttgtattcataacatttgaaactaatgtatatgtttactacttgtgtttca |
26512131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 836
Target Start/End: Original strand, 26512142 - 26512209
Alignment:
| Q |
767 |
aaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcat |
836 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||| |||||||||||| || ||||| ||||||||||||| |
|
|
| T |
26512142 |
aaaatgaatctaagtgggacaca--tgtccgtctaaatatatgtaacagataataaaatgatattagcat |
26512209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 764 - 836
Target Start/End: Original strand, 35608117 - 35608188
Alignment:
| Q |
764 |
tgcaaaatgaatctaagtaggacacacatgtacgtccaaatatatgtaatagtaaataagatgatattagcat |
836 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| || | ||| ||||| ||||||||||||| |
|
|
| T |
35608117 |
tgcaaaatga-tctaagtaggacacacatgtacgtccaaatatacgtgacagttaataaaatgatattagcat |
35608188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 586
Target Start/End: Original strand, 35607991 - 35608060
Alignment:
| Q |
517 |
aaagtatctgacttcttagagtagtcgcccaaacttgtattcataatatttgaagctgaagtatatgttt |
586 |
Q |
| |
|
||||||||| |||||||||| | |||||||||| |||||||||||| |||||||| | |||||||||||| |
|
|
| T |
35607991 |
aaagtatctcacttcttagaattgtcgcccaaatttgtattcataacatttgaagttaaagtatatgttt |
35608060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 665
Target Start/End: Complemental strand, 48316805 - 48316737
Alignment:
| Q |
597 |
tttcagttttgaaaataacggactccacggcccagaactgaaaggactggttccttatgattttggatg |
665 |
Q |
| |
|
||||||||||||||||||| ||||| || || |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
48316805 |
tttcagttttgaaaataacagactcagtggtccggaactgaaaggacttgttccgtatgattttggatg |
48316737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University