View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266-Insertion-7 (Length: 228)
Name: NF1266-Insertion-7
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 42739104 - 42739327
Alignment:
| Q |
8 |
caatgttattatgggtcgtatgactgaagatgaagaatgtagtttacctcgtgcattatttatttacatagtcacatcacac-------actatcaacta |
100 |
Q |
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| T |
42739104 |
caatgttattatgagtcgtatgactgaaaatgaggaatgtagtttacctcgtgcattattta----catagtcacatcacacatgacacactatcaacta |
42739199 |
T |
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| Q |
101 |
tttacatttcaactttgatagttaaatttaaaatacaaagtcaaaaaatacgagttggttatttccaagagagtgcgtgattgagttaagatagggaatc |
200 |
Q |
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| T |
42739200 |
tttacatttcagctttgatagttaaatttaaaatacaaagttaaaaaatacgagttagttatttccaagagagtgcgtgattgagttaagatagggaatc |
42739299 |
T |
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| Q |
201 |
gaatcagtggattccaaattagattgag |
228 |
Q |
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| T |
42739300 |
gaatcagtggattccaaattagattgag |
42739327 |
T |
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