View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1266-Insertion-8 (Length: 810)

Name: NF1266-Insertion-8
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1266-Insertion-8
NF1266-Insertion-8
[»] chr7 (6 HSPs)
chr7 (8-461)||(5645067-5645520)
chr7 (457-659)||(5644832-5645032)
chr7 (653-810)||(5644520-5644677)
chr7 (653-810)||(5650372-5650529)
chr7 (169-239)||(31802468-31802538)
chr7 (184-261)||(43203500-43203578)
[»] chr1 (2 HSPs)
chr1 (742-801)||(39477140-39477199)
chr1 (169-224)||(5617591-5617646)
[»] chr8 (1 HSPs)
chr8 (250-378)||(24797772-24797899)
[»] chr4 (3 HSPs)
chr4 (742-810)||(2187417-2187485)
chr4 (169-239)||(54421417-54421487)
chr4 (155-204)||(43733948-43733997)
[»] chr5 (1 HSPs)
chr5 (742-810)||(3613141-3613209)
[»] chr3 (3 HSPs)
chr3 (155-261)||(43892090-43892197)
chr3 (172-236)||(39694096-39694160)
chr3 (172-237)||(34297466-34297532)
[»] scaffold0996 (1 HSPs)
scaffold0996 (152-239)||(1539-1626)
[»] chr6 (2 HSPs)
chr6 (750-809)||(25329757-25329816)
chr6 (750-809)||(26198044-26198103)
[»] chr2 (3 HSPs)
chr2 (155-261)||(16468356-16468463)
chr2 (170-236)||(30928222-30928288)
chr2 (169-239)||(36756964-36757034)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 5645520 - 5645067
Alignment:
Q  8 gtaagttctatagtatatagcataaatgtttacatattcttaaattatgaatnnnnnnn-tgtttactccaatgtgtgtagtaagagaaaaccctaaaca 106  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||||        |||||| ||||||||||  || ||||||||||||||||||    
T  5645520 gtaagttcaatagtttatagcataaatgtttacatattcttaaattttgaataaaaaaaatgtttattccaatgtgt--aggaagagaaaaccctaaaca 5645423  T
Q  107 tcnnnnnnnnnagagcaaaggcagaatcactgcatttcatttataattaaagatatgagagttaggatgagataaggcagctctaacaatattatgagta 206  Q
    ||         |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||||| |||| |||||| |    
T  5645422 tctttttttt-agagcaaaggcagaatcactgcatttcatttacaattaaagatatgggggttaggatgagataagacagctctaataatactatgagca 5645324  T
Q  207 atcttgtttgcttgcctccgaacaaacgacactgcaag-tcagggttacttaacaataatgattttcattgaagcagaag-tccccaaattcattaagag 304  Q
    ||||| ||||||| ||| ||||||||||||||  |||  || ||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  5645323 atcttatttgcttaccttcgaacaaacgacacgacaaaatcggggttacttaacaataatgatttacattgaagcacaaggtccccaaatttattaagag 5645224  T
Q  305 gagtattagaggtatgaagtgcattaacaagtatcatgctatcagattcaaacaaaactctttgcataccattatagtcgttttgatggcttccaacaat 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5645223 gagtattagaggtatgaagtgcattaacaagtatcctgctatcagattcaaacaaaactctttgcataccattatagtcgttttgatggcttccaacaat 5645124  T
Q  405 cccatggattccgcttcaaagacagtggcagaaacttgaaaatagtctgacttacca 461  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5645123 cccatggattccgcttcaaagacaatggcagaaacttgaaaatagtctgacttacca 5645067  T

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Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 457 - 659
Target Start/End: Complemental strand, 5645032 - 5644832
Alignment:
Q  457 taccatatcctatgattgtgttcttgttgaaaattacggcatcaacgttaacatcttatatgatatttctattagaatacggtccaaccaaaatataatc 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||    
T  5645032 taccatatcctatgattgtgttcttgttgaaaattacggcatcaacgttaacatcttatatgatatttctatttgaatacggtccaaccaaaata--atc 5644935  T
Q  557 tttgaggtggatttacgaggactattgtgattatgaggcatttgttttagctcctataagtatttaatcttttttaaatagctctttggtagagtattag 656  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5644934 tttgaggtggatttaggaggactattgtgattatgaggcatttgttttagctcctataagtatttaatcttttttaaatagctctttggtagagtattag 5644835  T
Q  657 agt 659  Q
    |||    
T  5644834 agt 5644832  T

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Target: chr7; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 653 - 810
Target Start/End: Complemental strand, 5644677 - 5644520
Alignment:
Q  653 ttagagtatttactaggaataaagttaaagtaattgttcgaatcccagtaggaatataattatattttaatttggaaaaactactctaaggttgttgcgt 752  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5644677 ttagagtatttactaggaataaagttaaagtaattgttcgaatcccagtaggaatatagttatattttaatttggaaaaactactctaaggttgttgcgt 5644578  T
Q  753 gatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagatc 810  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5644577 gatcgtttgtcaactaaggtgaatttggcgaagcgctgtatcatctcttcagcagatc 5644520  T

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Target: chr7; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 653 - 810
Target Start/End: Complemental strand, 5650529 - 5650372
Alignment:
Q  653 ttagagtatttactaggaataaagttaaagtaattgttcgaatcccagtaggaatataattatattttaatttggaaaaactactctaaggttgttgcgt 752  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5650529 ttagagtatttactaggaataaagttaaagtaattgttcgaatcccagtaggaatatagttatattttaatttggaaaaactactctaaggttgttgcgt 5650430  T
Q  753 gatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagatc 810  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5650429 gatcgtttgtcaactaaggtgaatttggcgaagcgctgtatcatctcttcagcagatc 5650372  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31802538 - 31802468
Alignment:
Q  169 taggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacact 239  Q
    |||||||| |||||| ||||||| ||||| |||||| || ||| || ||||||||||||||| ||||||||    
T  31802538 taggatgacataaggaagctctagcaatactatgagcaaccttattagcttgcctccgaacatacgacact 31802468  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 43203500 - 43203578
Alignment:
Q  184 cagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacactgca-agtcagggttacttaacaa 261  Q
    |||||||| |||| |||||||| ||  | ||||||||||||| ||||||||||||| || |||| ||||||||||||||    
T  43203500 cagctctagcaatgttatgagtcatactatttgcttgcctcctaacaaacgacactacatagtcggggttacttaacaa 43203578  T

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Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 742 - 801
Target Start/End: Complemental strand, 39477199 - 39477140
Alignment:
Q  742 ggttgttgcgtgatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctctt 801  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  39477199 ggttgttgcgtgatcgtttgccaactaaggcgaatttggcgaagcgcggtatcatctctt 39477140  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 5617646 - 5617591
Alignment:
Q  169 taggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctc 224  Q
    ||||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||    
T  5617646 taggatgagataaggaagctctgacaattttataagtaatcttgtttgtttgcctc 5617591  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 24797899 - 24797772
Alignment:
Q  250 gttacttaacaataatgattttcattgaagcagaag-tccccaaattcattaagaggagtattagaggtatgaagtgcattaacaagtatcatgctatca 348  Q
    ||||||||||||||| | ||| |||| ||||| ||| | || ||||| |||||| || ||||||||||||| || |||||||||||||||  || |||||    
T  24797899 gttacttaacaataaagttttacatttaagcacaaggttcctaaattaattaagcggtgtattagaggtattaattgcattaacaagtatactgttatca 24797800  T
Q  349 gattcaaacaaaactctttgcataccatta 378  Q
     ||||||||  |||||||||||||||||||    
T  24797799 tattcaaac--aactctttgcataccatta 24797772  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 742 - 810
Target Start/End: Complemental strand, 2187485 - 2187417
Alignment:
Q  742 ggttgttgcgtgatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagatc 810  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||  |||||| ||| || ||||||    
T  2187485 ggttgatgcgtgatcgtttgccaactaaggtgaatttggcgaagcgcgatatcatttctacaacagatc 2187417  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 54421417 - 54421487
Alignment:
Q  169 taggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacact 239  Q
    ||||||| ||||||| ||||||| ||||| |||||  || ||| || ||||||||||||| ||||||||||    
T  54421417 taggatgtgataaggaagctctagcaatactatgaccaaccttattagcttgcctccgaataaacgacact 54421487  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 43733997 - 43733948
Alignment:
Q  155 aaagatatgagagttaggatgagataaggcagctctaacaatattatgag 204  Q
    ||||||||| | | ||||||||||||||||||||||| ||||| ||||||    
T  43733997 aaagatatgggggctaggatgagataaggcagctctagcaatactatgag 43733948  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 742 - 810
Target Start/End: Original strand, 3613141 - 3613209
Alignment:
Q  742 ggttgttgcgtgatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagatc 810  Q
    |||||||||||||||||| | ||||||||| ||| | |||||| | | |||||||||||||||||||||    
T  3613141 ggttgttgcgtgatcgttggccaactaaggcgaactcggcgaaacacggtatcatctcttcagcagatc 3613209  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 43892197 - 43892090
Alignment:
Q  155 aaagatatgagagttaggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacactgca-agtcagggtta 253  Q
    ||||| ||||| |||||||| |||||  ||||||||| |||| |||||||  |   | ||||||||||||| ||||||||||||| || |||| ||||||    
T  43892197 aaagagatgagggttaggattagatagagcagctctagcaatgttatgagccacactatttgcttgcctcctaacaaacgacactacatagtcggggtta 43892098  T
Q  254 cttaacaa 261  Q
    ||||||||    
T  43892097 cttaacaa 43892090  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 39694096 - 39694160
Alignment:
Q  172 gatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgac 236  Q
    ||||||||||| || || ||| |||||||||||||| ||| ||||||||||||  ||||||||||    
T  39694096 gatgagataagacaactttaataatattatgagtaaacttatttgcttgcctctaaacaaacgac 39694160  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 34297466 - 34297532
Alignment:
Q  172 gatgagataaggcagctctaacaatattatgag-taatcttgtttgcttgcctccgaacaaacgaca 237  Q
    ||||||||||||| |||||||||||| ||||||  || ||| ||| ||||||||| |||||||||||    
T  34297466 gatgagataaggcggctctaacaataatatgagcaaaccttatttacttgcctcctaacaaacgaca 34297532  T

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Target: scaffold0996 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 1539 - 1626
Alignment:
Q  152 attaaagatatgagagttaggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacact 239  Q
    |||||| ||||| | | |||||||| |||||| ||||||| ||||| |||||| || | | || ||||||||||||||| ||||||||    
T  1539 attaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgcctccgaacatacgacact 1626  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 809
Target Start/End: Complemental strand, 25329816 - 25329757
Alignment:
Q  750 cgtgatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagat 809  Q
    |||||||||||  ||||||||||||||||||| |||||  ||||||| ||| ||||||||    
T  25329816 cgtgatcgtttaccaactaaggtgaatttggcaaagcgaggtatcatttctacagcagat 25329757  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 809
Target Start/End: Original strand, 26198044 - 26198103
Alignment:
Q  750 cgtgatcgtttgtcaactaaggtgaatttggcgaagcgcagtatcatctcttcagcagat 809  Q
    |||||||||||  ||||||||||||||||||| |||||  ||||||| ||| ||||||||    
T  26198044 cgtgatcgtttaccaactaaggtgaatttggcaaagcgaggtatcatttctacagcagat 26198103  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 16468356 - 16468463
Alignment:
Q  155 aaagatatgagagttaggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacactgca-agtcagggtta 253  Q
    ||||| ||||| | |||||| |||||  ||||||||| |||| |||||||  |   ||||||||| ||||| ||||||||||||| || |||| ||||||    
T  16468356 aaagacatgagggctaggattagatagagcagctctagcaatgttatgagctacactgtttgcttacctcctaacaaacgacactacatagtcggggtta 16468455  T
Q  254 cttaacaa 261  Q
    ||||||||    
T  16468456 cttaacaa 16468463  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 30928288 - 30928222
Alignment:
Q  170 aggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgac 236  Q
    ||||||||||||||| |||||| ||||| |||||| || ||| |||  |||||||| ||||||||||    
T  30928288 aggatgagataaggcggctctagcaatactatgagcaaccttatttatttgcctcctaacaaacgac 30928222  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 36756964 - 36757034
Alignment:
Q  169 taggatgagataaggcagctctaacaatattatgagtaatcttgtttgcttgcctccgaacaaacgacact 239  Q
    ||||||| ||||||| ||||||| ||||| |||||| ||  || || ||||||||||||| ||||||||||    
T  36756964 taggatgtgataaggaagctctagcaatactatgagcaactttattagcttgcctccgaataaacgacact 36757034  T

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