View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1266-Insertion-9 (Length: 344)
Name: NF1266-Insertion-9
Description: NF1266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1266-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 38554661 - 38554525
Alignment:
| Q |
181 |
agatccaacaagcaatttgttcatttgtcgatgca--attcatcaaaagtattgttcacatcagcgttgttcgcatcacgaacaccgttcatcatgatca |
278 |
Q |
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| T |
38554661 |
agatccaacaagc--tttgttcatttgtcgatgcactattcatcgaaagtattgttcacatcagcattgtttgcatcacgaacaccgttcatcatgatca |
38554564 |
T |
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| Q |
279 |
ttgtccacattcgcgcattgctcccctcgttagtactgt |
317 |
Q |
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| T |
38554563 |
ttgtccacattcgcgcattgttcacctcgttagtactgt |
38554525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 38555166 - 38555084
Alignment:
| Q |
18 |
agttgattaattgcattctacccgataaagggagcaacattttcattgaaataatatactctcaaattatacagtgatttcta |
100 |
Q |
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| T |
38555166 |
agttgattaattgtatgctaccctatatagggagcaacattttcattgaaataatatactctcaaattatatagtaatttcta |
38555084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 38554748 - 38554684
Alignment:
| Q |
94 |
atttctatatggcatcaaagcccattattttgcttctatgtaaaccatgtgcgtcgtcgtaacaa |
158 |
Q |
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| T |
38554748 |
atttctatatggcatcaaagcccttgattttgcttctacataaaccctatacgtcgtcgtaacaa |
38554684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10863069 - 10863002
Alignment:
| Q |
17 |
gagttgattaattgcattctacccgataaagggagcaacattttcattgaaataatatactctcaaat |
84 |
Q |
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| T |
10863069 |
gagttgattagttgtattctctcctataaaaggagcaccattctcattgaaataatatactctcaaat |
10863002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 52681682 - 52681619
Alignment:
| Q |
17 |
gagttgattaattgcattctacccgataaagggagcaacattttcattgaaataatatactctc |
80 |
Q |
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| T |
52681682 |
gagttgattaattgtattctctcctataaaaggagcaccattttcattgaaataaattactctc |
52681619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11959934 - 11959872
Alignment:
| Q |
17 |
gagttgattaattgcattctacccgataaagggagcaacattttcattgaaataatatactct |
79 |
Q |
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| T |
11959934 |
gagttgattagttgtattctctcctataaatggagcaccattttcattgaaataaaatactct |
11959872 |
T |
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