View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_10 (Length: 405)
Name: NF12660_high_10
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 10037576 - 10037959
Alignment:
| Q |
12 |
acctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaagagctgggtatacca |
111 |
Q |
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| T |
10037576 |
acctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaagagctgggtatacca |
10037675 |
T |
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| Q |
112 |
tggaagtaagtttcttttaagttgattaggttgataagaaacatttgcnnnnnnnnnnnnnnnnnccttcctagtctcctctctttctttcggaggactg |
211 |
Q |
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| T |
10037676 |
tggaagtaagtttcttttaagttgattaggttgataagaaacatttgcttttttattgattttttccttcctagtctcctctctttctttcagaggactg |
10037775 |
T |
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| Q |
212 |
gtgcatcctttgcggttcatccagaataaataatttttatgtatttgaatttattcatgtgaggattacaagagcttgggaaatatgttaatattgttta |
311 |
Q |
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| T |
10037776 |
gtgcatcctttgcggttcatccagaataaataatttttatgtatttgaatttattcatgtgaggattacaagagcttgggaaatatgttaatattgttta |
10037875 |
T |
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| Q |
312 |
accttccaacttacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcacaggtt |
395 |
Q |
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| T |
10037876 |
accttcaaacttacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcataggtt |
10037959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 48482945 - 48482863
Alignment:
| Q |
15 |
tgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
97 |
Q |
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| T |
48482945 |
tgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
48482863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 395
Target Start/End: Complemental strand, 48482640 - 48482568
Alignment:
| Q |
323 |
tacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcacaggtt |
395 |
Q |
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| T |
48482640 |
tacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatattgcgcagttcacaggtt |
48482568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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