View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_13 (Length: 378)
Name: NF12660_high_13
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 15864401 - 15864752
Alignment:
| Q |
17 |
aataaatgacctatttcatgaaccacaacagattctaaatcaacagcgttagataaagatgactccgttacatctccgttaactacccaatcttcagctt |
116 |
Q |
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| T |
15864401 |
aataaatgacctatttcatgaaccacaacagattctaaatcaacagcgttagataaagatgactccgttacatctccgttaactacccaatcttcagctt |
15864500 |
T |
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| Q |
117 |
tatctaaatgtaatcttccgtcagttggtgaaaaagcgtgtgctaatgttccaaggactccgtcaaatgcttctccgtcaccatggtccccactgtaaaa |
216 |
Q |
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| T |
15864501 |
tatctaaatgtaatcttccgtcagttggtgaaaaagcgtgtgctaatgttccaaggactccgtcaaatgcttctccgtcaccatggtccccactgtaaaa |
15864600 |
T |
|
| Q |
217 |
ccctattttaatatctgatgaactatatgacgttgcttctgtgaatgttattgttgttacttttgaccattgattaaaagcgtttgcgaaaacttgtttc |
316 |
Q |
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| T |
15864601 |
ccctattttaatatctgatgaactatatgacgttgcttctgtgaatgttattgtagttacttttgaccattgattaaaagcgtttgcgaaaacttgtttc |
15864700 |
T |
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| Q |
317 |
gttgcgtcgtcgaggatttcgcttggatcgaaagagtaggttagggtctgtg |
368 |
Q |
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| T |
15864701 |
gttgcatcgtcgaggttttcgctaggatcgaaagcgtaggttagggtttgtg |
15864752 |
T |
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