View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_16 (Length: 334)
Name: NF12660_high_16
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 1663724 - 1663869
Alignment:
| Q |
145 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg |
244 |
Q |
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| T |
1663724 |
tcttcttctaatagtaatacaagaaatagacaagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactg |
1663823 |
T |
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| Q |
245 |
ttcatcgtggtgtttatgatggcatagatgttgctggtacttctct |
290 |
Q |
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| T |
1663824 |
ttcatcgtggtgtttatgatggcatagatgttgctggtacttctct |
1663869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 1663580 - 1663670
Alignment:
| Q |
1 |
gagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggactatgg |
91 |
Q |
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| T |
1663580 |
gagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatcttagtagagcatggactatgg |
1663670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31046764 - 31046676
Alignment:
| Q |
1 |
gagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagatgaacaattacaaaggcatctt--agtagagcatggact |
87 |
Q |
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| T |
31046764 |
gagagtggtggatatgtgagagcagatcaaatagatctgaagagtttagacgaacaattacaaaggcatcttacagtagagcatggact |
31046676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 43970824 - 43970907
Alignment:
| Q |
181 |
tgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgat |
264 |
Q |
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| T |
43970824 |
tgggaaattgatccttctaaactcatcatcaaaagtgttattgctcgtggcacttttggcactgttcatcgtggtgtttatgat |
43970907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 35189455 - 35189562
Alignment:
| Q |
176 |
aagaatgggagattgatccttctaaacttattatcaaaactgtcattgctcgtggtacttttggtactgttcatcgtggtgtttatgatggcatagatgt |
275 |
Q |
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| T |
35189455 |
aagagtgggaaattgatccttctaacctcatcatcaagagtgtcttagctcgtggcactttcggtactgttcaccgtggtttctatgatggccaagatgt |
35189554 |
T |
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| Q |
276 |
tgctggta |
283 |
Q |
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| T |
35189555 |
tgctggta |
35189562 |
T |
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