View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_18 (Length: 321)
Name: NF12660_high_18
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 71 - 265
Target Start/End: Complemental strand, 36822094 - 36821900
Alignment:
| Q |
71 |
catgtcacacttgattaatcatgtgtatgaataaatatggttaaatcaactgagttcatcgttaacagagtcaaaattgtgtaaactcaactacattaat |
170 |
Q |
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| T |
36822094 |
catgtcacacttgattaatcatgtgtatgaataaatatggttaaatcaactgagttcatcgttaacagagtcaaaattgtgtaaactcaactacattaat |
36821995 |
T |
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| Q |
171 |
tttcaatgtgaattgtattatttaccgtttgcaaatttcttatggcaggtaatggcatagttacagtttttgcgaactctaataatgtgtatctg |
265 |
Q |
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| T |
36821994 |
tttcaatgtgaattgtattatttaccgtttgcaaatttcttatggcaggtaatggcatagttacagtttttgtgaactctaataatgtgtatctg |
36821900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 36822129 - 36822093
Alignment:
| Q |
19 |
tatttctctcttatctgattttgaaatcaaatggtca |
55 |
Q |
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| T |
36822129 |
tatttctctcttatctgattttgaaatcaaatggtca |
36822093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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