View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12660_high_2 (Length: 638)
Name: NF12660_high_2
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_2 |
 | |
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| [»] chr4 (9 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0291 (2 HSPs) |
| | |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Complemental strand, 7916217 - 7915595
Alignment:
| Q |
16 |
cacagaccggttcattctcgttggtttagccttgagaaatttggttttggtgcacttgaaggtgatagaagaaatgagcagaaattttcaagtaggattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916217 |
cacagaccggttcattctcgttggtttagccttgagaaatttggttttggtgcacttgaaggtgatagaagaaatgagcagaaattttcaagtaggattc |
7916118 |
T |
|
| Q |
116 |
atcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaagacagctatggaagcagcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916117 |
atcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaagacagctatggaagcagcc |
7916018 |
T |
|
| Q |
216 |
tatcggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaa |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916017 |
tattggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaa |
7915918 |
T |
|
| Q |
316 |
tatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtca |
415 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915917 |
tatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtca |
7915818 |
T |
|
| Q |
416 |
taacactaggtgtttttgacaattgtcatttaggtgaaaaagctcccagtggaagttcaattaaagattcaagaattggaaaggtaaggattaggctatc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915817 |
taacactaggtgtttttgacaattgtcatttaggtgaaaaagctcccagtggaagttcaattaaagattcaagaattggaaaggtaaggattaggctatc |
7915718 |
T |
|
| Q |
516 |
aacacttgaagccaataaaatttacaccaattcttatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaactcacagtgagg |
615 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915717 |
aacacttgaagccaataaaatttacaccaattcttatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaactcacagtgagg |
7915618 |
T |
|
| Q |
616 |
ttcactgcactctcactagctaa |
638 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7915617 |
ttcactgcactctcactagctaa |
7915595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 7833520 - 7833389
Alignment:
| Q |
200 |
agctatggaagcagcctatcggaatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgc |
299 |
Q |
| |
|
||||| || ||||||||| ||||||||||| || |||||||||||| |||||||||||| |||| ||| |||||||||| ||||||||||| |||||| |
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| T |
7833520 |
agctacggtagcagcctaatggaatacttgaaataggcatcttaggataaaaagggcttctgcctaagaaaatgaaggatgttcatggtagcatagatgc |
7833421 |
T |
|
| Q |
300 |
atactgtgttgctaaatatggtcagaaatgga |
331 |
Q |
| |
|
|||| |||| | |||||||||||| |||||| |
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|
| T |
7833420 |
ataccgtgtacccaaatatggtcaggaatgga |
7833389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 605
Target Start/End: Complemental strand, 7833337 - 7833269
Alignment:
| Q |
537 |
ttacaccaattcttatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaact |
605 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||| |||| ||| ||||| |||||||| |
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|
| T |
7833337 |
ttacaccaattcttattcacttcttgttttacaccaacagggagtaaagagaataggtgaacttcaact |
7833269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 7906758 - 7906611
Alignment:
| Q |
313 |
aaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactg |
412 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||| ||||| ||||||| ||||| ||||||| || ||| ||||| |||||||| ||| |
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|
| T |
7906758 |
aaatatggtcagaaatggatctaaacaagaaaacttttcgacattttcaaacccaaattaaatgaacaatacaaataggaggtttaatatccttgccctg |
7906659 |
T |
|
| Q |
413 |
tcataaca----ctaggtgtttttgacaattgtcatttaggtgaaaaa |
456 |
Q |
| |
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| || ||| || ||||||||||||||| ||| ||||||||||| |
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| T |
7906658 |
tgatgacatcagctgtttgtttttgacaattgccatataggtgaaaaa |
7906611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 7906849 - 7906801
Alignment:
| Q |
238 |
atcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatgg |
287 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||||||| |
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|
| T |
7906849 |
atcttaggagcaaaagtg-ttctgcctatgaagatgaaggatggtcatgg |
7906801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 585 - 638
Target Start/End: Complemental strand, 7882775 - 7882718
Alignment:
| Q |
585 |
gaaaatgggtgagctt----caactcacagtgaggttcactgcactctcactagctaa |
638 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
7882775 |
gaaaatgggtgagcttgattcaactcacactgaggttcacagcactctcactagctaa |
7882718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 21197835 - 21197795
Alignment:
| Q |
370 |
tggaatgagcaatacacatgggaagtttatgatccttgcac |
410 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
21197835 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
21197795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 27253677 - 27253637
Alignment:
| Q |
370 |
tggaatgagcaatacacatgggaagtttatgatccttgcac |
410 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
27253677 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
27253637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 438
Target Start/End: Complemental strand, 11577494 - 11577425
Alignment:
| Q |
369 |
atggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaat |
438 |
Q |
| |
|
|||||||||||| || |||||||| ||| ||||||| |||||||| || ||| | |||||||||||||| |
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| T |
11577494 |
atggaatgagcagtatacatgggaggttcatgatccatgcactgtgatcacagttagtgtttttgacaat |
11577425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 638
Target Start/End: Complemental strand, 8416664 - 8416033
Alignment:
| Q |
22 |
ccggttcattctcgttggtttagccttgagaaatttggttttggtgcacttgaaggtgatagaagaaatgagcagaaattttcaagtaggattcatctta |
121 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| |||||||| | | |
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|
| T |
8416664 |
ccggttcattctcgatggttcaatcttgagaaatacggttttggaatgatggaaggtgatagaagaaacgaggttaaattttcaagcaggattcacatga |
8416565 |
T |
|
| Q |
122 |
gagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaagacagctatggaagcagcctatcgg |
221 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || |
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|
| T |
8416564 |
gaatttgcctcgaaggtggttaccatgtcttagatgaatcaactttgtatgcaagtgatcatagaccaacagctagacagctatggaagcagcctatagg |
8416465 |
T |
|
| Q |
222 |
aatacttgagatgggcatcttaggagcaaaagggcttctccctatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggt |
321 |
Q |
| |
|
||| ||||| | || |||||||||||| || |||||| || ||||||||||| || | | ||| ||||| ||||| ||||| || || || |||||| |
|
|
| T |
8416464 |
aatgcttgaagtagggatcttaggagcacaaaagcttcttccaatgaagatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggt |
8416365 |
T |
|
| Q |
322 |
cagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacac |
421 |
Q |
| |
|
||||||||||||||||| ||||| || | |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8416364 |
cagaaatggatcagaactagaactattcttgacacttttagtcctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaataacac |
8416265 |
T |
|
| Q |
422 |
taggtgtttttgacaattgtcatttaggt---------gaaaaagctccca---gtggaag---ttcaattaaagattcaagaattggaaaggtaaggat |
506 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| ||||||||||| | ||||||| | || || |||||||| || |||||||| ||||| |
|
|
| T |
8416264 |
taggagtttttgataattgccatttaggtggtggaggagaaaaagctcctagtggtggaagcaatgcagctagggattcaaggatcggaaaggttaggat |
8416165 |
T |
|
| Q |
507 |
taggctatcaacacttgaagccaataaaatttacaccaattcttatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaactc |
606 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||| || ||| |||| || ||||||||||||||||||||||| |
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|
| T |
8416164 |
taggctctcaacacttgaagctaatagaatttacacaaactcttatccacttcttgttttgcatcaaaatggtgtcaagaaaatgggtgagcttcaacta |
8416065 |
T |
|
| Q |
607 |
acagtgaggttcactgcactctcactagctaa |
638 |
Q |
| |
|
|| | ||||||||| | || ||| ||||||| |
|
|
| T |
8416064 |
gcaataaggttcactactctttcaatagctaa |
8416033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 292 - 451
Target Start/End: Complemental strand, 3745 - 3586
Alignment:
| Q |
292 |
acagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatggg |
391 |
Q |
| |
|
|||||||| || ||||| || ||||||||| ||||||| | |||||||||||| | || | ||| | ||| ||||||||||| ||||||||||||| |
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|
| T |
3745 |
acagatgcttattgtgtagcaaaatatggtatgaaatgggttagaacaagaacaatcactgagagttttaatccaaaatggaatgaacaatacacatggg |
3646 |
T |
|
| Q |
392 |
aagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggtg |
451 |
Q |
| |
|
||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
3645 |
aagttcatgatccttgcacagttataacttttggtgtttttgacaattgtcatttaggtg |
3586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 3940 - 3825
Alignment:
| Q |
97 |
aaattttcaagtaggattcatcttagagtttgccttgaaggtggataccatgttttagatgaatccactttgtacattagtgatcaaagaccaacagcaa |
196 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||||| || |||||| | ||||||||||| |||| || |||||| |||| |||| || | |
|
|
| T |
3940 |
aaattctcaagtaggattcaccttagagtttgtcttgaaggtgcttatcatgttcttgatgaatccacaatgtatataagtgatacaagaacaactgcta |
3841 |
T |
|
| Q |
197 |
gacagctatggaagca |
212 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
3840 |
gacaactatggaagca |
3825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 9528986 - 9529027
Alignment:
| Q |
369 |
atggaatgagcaatacacatgggaagtttatgatccttgcac |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9528986 |
atggaatgagcaatacacatgggatgtttatgatccttgcac |
9529027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 13708 - 13632
Alignment:
| Q |
370 |
tggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcattt |
446 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||||||| ||||| || ||| | ||||| ||||| ||||||||||| |
|
|
| T |
13708 |
tggaatgagcaatatacttgggaggtttttgatccttgtactgtgattacaattggtgtatttgataattgtcattt |
13632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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