View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12660_high_21 (Length: 291)

Name: NF12660_high_21
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12660_high_21
NF12660_high_21
[»] chr7 (5 HSPs)
chr7 (10-276)||(11527695-11527961)
chr7 (10-273)||(23532011-23532274)
chr7 (10-238)||(15931818-15932046)
chr7 (10-277)||(15834485-15834752)
chr7 (30-267)||(12537983-12538220)
[»] chr3 (4 HSPs)
chr3 (10-277)||(102899-103166)
chr3 (10-276)||(14565764-14566030)
chr3 (10-275)||(15418096-15418361)
chr3 (20-211)||(16083050-16083241)
[»] chr8 (2 HSPs)
chr8 (10-277)||(21408730-21408998)
chr8 (10-277)||(21803222-21803490)
[»] scaffold0071 (1 HSPs)
scaffold0071 (10-275)||(43877-44142)
[»] chr2 (1 HSPs)
chr2 (10-277)||(29603282-29603543)
[»] scaffold0074 (1 HSPs)
scaffold0074 (10-277)||(56660-56927)
[»] scaffold0443 (1 HSPs)
scaffold0443 (22-277)||(6116-6367)
[»] chr4 (1 HSPs)
chr4 (50-276)||(20494984-20495210)
[»] chr6 (1 HSPs)
chr6 (10-277)||(11695108-11695375)
[»] scaffold0888 (1 HSPs)
scaffold0888 (10-102)||(4436-4528)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 11527695 - 11527961
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  11527695 agaagcagaaacgatgaagagtcagatcgcccagttgttggaaaagaacgaagccctactcgcttcagtggaaaccatccagcaacagcagcaacaagag 11527794  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  11527795 aaggcggactctcatcacggcgagatggatgaaccagaaccccagccgttctcaactgaaatatggaacgctcctgttccagataacttcaaaccgccgc 11527894  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtc 276  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  11527895 acttaccaactttcgacaggagaggtgatccatctgaacatgtaactgttttcaacaccaggatgtc 11527961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 23532274 - 23532011
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23532274 agaagcagaaacgatgaagagtcagatcgcccagttgatggaacagaacaaagccctactcgcttcggtggaaaccatccagcaacagcagcaacaagag 23532175  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||| |||||||||||| |||||    
T  23532174 aaggcggactctcatcacggcgagctggatgaaccagaaccccagccgttctcaactaaaatatggaacgctccggttccagataacttcaaactgccgc 23532075  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggat 273  Q
    ||||| |||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||    
T  23532074 acttaccaactttcgacgggaggggtgatgcatctgagcatgtaaccgttttcaacaccaggat 23532011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 15932046 - 15931818
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||| |||    
T  15932046 agaagcagaaacggtgaagagtcagatcgcccagttgttggaacagaacgaagctctactcgcctcggtggaaaccatccagcaacaacagctacaggag 15931947  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||| || |||||| ||||||| | ||||||||| |||||| |||||||||||| ||| |    
T  15931946 aaggcggactctcatcacggcgatctggatgagccagaaccccaaccgttctcatctgaaatctggaacgctccggttccagataacttcaaaccgcctc 15931847  T
Q  210 acttatcaactttcgacgggagaggtgat 238  Q
    ||||  | ||||| |||||||| ||||||    
T  15931846 acttgcctacttttgacgggaggggtgat 15931818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 15834752 - 15834485
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| |||| |||| | |||| |||||||| |||||||| ||||| || || || ||||| || || ||||| |||||||||  ||| || |||||     
T  15834752 agaagcacagacaatgaggagtcaaatcgcccaattgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaagtgcaacagcaagaa 15834653  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||| | ||||||||| | |||||  ||||||| ||||| || || || || ||||||||||||| |||||| || |||||  | ||||| |||| ||| |    
T  15834652 aagaccgactctcatcatggcgatttggatgagccagagcctcaaccgttttcaactgaaatatggaacgcaccggttcccgacaactttaaaccgcctc 15834553  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    |  || || ||||||| || ||||| ||| | ||||| ||||||||| | ||||||||  ||||||||    
T  15834552 atctaccatctttcgatggaagaggcgatccttctgagcatgtaaccgtcttcaacactcggatgtcc 15834485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 12538220 - 12537983
Alignment:
Q  30 gtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagagaaggcggactctcattacgg 129  Q
    |||| ||| |||| |||||||| ||||| || || || ||||| || || ||||| |||||||||  ||| || ||||| | ||| ||||||||| | ||    
T  12538220 gtcaaatcacccaattgttggagcagaatgaggcacttctcgcctcagtcgaaactatccaacaagtgcaacagcaagaaagggccgactctcatcatgg 12538121  T
Q  130 cgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgcacttatcaactttcgacggg 229  Q
    |||  ||||||| ||||| || || || || ||||||||||||| ||||||||| |||||  ||||||| |||| ||| ||  || || ||||||| ||     
T  12538120 cgatttggatgagccagagcctcaaccgttttcaactgaaatatggaacgctccggttcccgataactttaaaccgcctcatctaccatctttcgatgga 12538021  T
Q  230 agaggtgattcatctgaacatgtaaccattttcaacac 267  Q
    ||||| ||| | ||||| ||||||||| | ||||||||    
T  12538020 agaggcgatccttctgagcatgtaaccgtcttcaacac 12537983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 103166 - 102899
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||    
T  103166 agaaggagaaacgatgaagagtcagatcgcccagttgctggaacagaacgaagccctgctcgcttcagtggaaaccattcagcaacagcagcaacaagag 103067  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||| ||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||  |||||||||||| ||| |    
T  103066 aaggcagactctcatcacggcgagatggatgaaccggaaccccagccgttctcaactgaaatatggaacgctcttgttccggataacttcaaaccgccac 102967  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    ||||  | ||||||||| ||||||| ||| ||||||||||||||||  ||||||||||||| ||||||    
T  102966 acttgcccactttcgacaggagaggagatccatctgaacatgtaactgttttcaacaccagaatgtcc 102899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 14566030 - 14565764
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    |||||| || ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||     
T  14566030 agaagctgaaacgatgaagagtcagatcgcccaattattggagcagaacgaagccctactcgcttcagtggaaaccattcagcaacagcagcaacaagaa 14565931  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    |||||||||| |||| |||||||| |||||| ||||||||||||||| ||||||||||| |||| ||||||||| |||||  ||||||| || | ||| |    
T  14565930 aaggcggactgtcatcacggcgagatggatgtaccagaaccccagccgttctcaactgagatatggaacgctcccgttccggataactttaagccgccac 14565831  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtc 276  Q
    ||||  | ||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  14565830 acttgcccactttcgacgggagaggagatccatctgaacatgtaaccgttttcaacactaggatgtc 14565764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 15418096 - 15418361
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||| ||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||    
T  15418096 agaagtagaaacgatgaaaagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcggtggaaaccatccagcaacaacagcaacaggag 15418195  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    || |||||||| |   |||||||||||||||| |||||||||||||| |||||| | ||||||| ||||||||| |||||| |||||||||||| ||| |    
T  15418196 aaagcggactcccgccacggcgagctggatgagccagaaccccagccgttctcagccgaaatatggaacgctccggttccagataacttcaaaccgcctc 15418295  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgt 275  Q
    ||||  | || || |||||||| |||||| |||| |||||| | ||| | ||||||||||||||||    
T  15418296 acttgcctacctttgacgggaggggtgatccatcggaacatatgaccgtcttcaacaccaggatgt 15418361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 16083050 - 16083241
Alignment:
Q  20 acgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagagaaggcggact 119  Q
    ||||||||  |||||||||||||| ||||||||||||| |||||  ||||||| ||||| |||||||||||||| ||||||   || |||| | ||||||    
T  16083050 acgatgaaaagtcagatcgcccagctgttggaacagaatgaagctttactcgcctcggttgaaaccatccaacagcagcagatgcaggagaggacggact 16083149  T
Q  120 ctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgcac 211  Q
    ||||| | |||||||| |||||||| ||||||||||| |||||| ||||||||| ||||||||| |||||  | |||||||||| |||||||    
T  16083150 ctcatcatggcgagcttgatgaaccggaaccccagccgttctcagctgaaatatggaacgctccagttccggagaacttcaaaccgccgcac 16083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 21408730 - 21408998
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||    
T  21408730 agaagcacaaacgatgaagagtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaactatccagcagctgcagcaacaagag 21408829  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    |||||| |||||||| ||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||| |||||  |||||||||| | |||||    
T  21408830 aaggcgaactctcatcacggcgagctggatgaacccgaacctcagccgttctcaaccgaaatatagaacgctccggttccggataacttcaagccgccgc 21408929  T
Q  210 acttatc-aactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    ||||| | ||||||| |||  || |||||| | ||||| ||||||||| | ||||||||||||||||||    
T  21408930 acttaccaaactttcaacgaaaggggtgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 21408998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 21803222 - 21803490
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||    
T  21803222 agaagcacaaacgatgaagagtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaactatccagcagctgcagcaacaagag 21803321  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    |||||| |||||||| ||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||||| |||||  |||||||||| | |||||    
T  21803322 aaggcgaactctcatcacggcgagctggatgaacccgaacctcagccgttctcaaccgaaatatagaacgctccggttccggataacttcaagccgccgc 21803421  T
Q  210 acttatc-aactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    ||||| | ||||||| |||  || |||||| | ||||| ||||||||| | ||||||||||||||||||    
T  21803422 acttaccaaactttcaacgaaaggggtgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 21803490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 44142 - 43877
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||| ||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||    
T  44142 agaagtagaaacgatgaaaagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcggtggaaaccatccagcaacaacagcaacaggag 44043  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    || |||||||| |   |||||||||||||||| |||||||||||||| |||||| | ||||||| ||||||||| |||||| |||||||||||| ||| |    
T  44042 aaagcggactcccgccacggcgagctggatgagccagaaccccagccgttctcagccgaaatatggaacgctccggttccagataacttcaaaccgcctc 43943  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgt 275  Q
    ||||  | || || |||||||| |||||| |||| |||||| | ||| | ||||||||||||||||    
T  43942 acttgcctacctttgacgggaggggtgatccatcggaacatatgaccgtcttcaacaccaggatgt 43877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 29603543 - 29603282
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| | ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||||      |||    
T  29603543 agaagcacaaacgatgaggagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcagtggagactatccagcagcagcag------gag 29603450  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |||||| |||||||||| | |||||    
T  29603449 aaggcggactctcatcacggcgagctggatgaaccagagccccagccgttttcaactgaaatatggaacgctccggttccagataacttcaagccgccgc 29603350  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    ||||| |||||||| | || || || ||| | ||||| ||||||||| | ||||||||||||||||||    
T  29603349 acttaccaactttcaatggaaggggcgatccttctgagcatgtaaccgtcttcaacaccaggatgtcc 29603282  T

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Target: scaffold0074 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 56660 - 56927
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| | ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||| ||||||| || |||    
T  56660 agaagcacaaacgatgaggagtcagatcgcccagttgttggaacagaacgaagctctactcgcttcagtggagactatccagcaatagcagcagcaggag 56759  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    ||||||||||||||| | ||||||||||| |||||||| ||||| || |||||||| ||||||| ||||||||| |||| | |||||||||| | |||||    
T  56760 aaggcggactctcatcatggcgagctggaggaaccagagccccaaccgttctcaaccgaaatatggaacgctccggttcaagataacttcaagctgccgc 56859  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    ||||| |||| ||| | || || || ||||| ||||| ||||||||| | ||||||||||||||||||    
T  56860 acttaccaaccttcaatggaaggggcgattcgtctgagcatgtaaccgtcttcaacaccaggatgtcc 56927  T

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Target: scaffold0443 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 6367 - 6116
Alignment:
Q  22 gatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagagaaggcggactct 121  Q
    |||||||  |||||||||||||||||||||||||||||||    | |||||||||||||| || ||||| ||||  ||||| ||||| |||||||| |||    
T  6367 gatgaagactcagatcgcccagttgttggaacagaacgaa----ttctcgcttcggtggagactatccagcaactacagcagcaagaaaaggcggattct 6272  T
Q  122 cattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgcacttatcaactt 221  Q
    ||| |||||||| ||||||||||||| ||||| |  || | ||| ||||||| ||||||||| || ||  |||||||||||| |||||||||  ||||||    
T  6271 catcacggcgagttggatgaaccagagccccaactgttttaaaccgaaatatggaacgctccagtcccggataacttcaaaccgccgcacttgccaactt 6172  T
Q  222 tcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    |||| || || || ||| | ||||| ||||||||| | ||||||||  ||||||||    
T  6171 tcgatggaaggggcgatccttctgagcatgtaaccgtcttcaacactcggatgtcc 6116  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 276
Target Start/End: Original strand, 20494984 - 20495210
Alignment:
Q  50 gaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagagaaggcggactctcattacggcgagctggatgaaccagaac 149  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||| | ||||| || ||||| | |||||    
T  20494984 gaacagaacgaagctctgctcgcttcggtggaaaccatccagcaacaacagcagcaggagaaggctgactctcatcatggcgacctagatgagctagaac 20495083  T
Q  150 cccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgcacttatcaactttcgacgggagaggtgattcatctgaaca 249  Q
    |||| |   |||| ||| ||||   ||||||||| ||| |||| ||||| |||| ||| || ||| | || ||||||||||   ||||| |||  || ||    
T  20495084 cccaactgctctcgactaaaatcaggaacgctccggttacaaaaaactttaaaccgcctcagttacctaccttcgacgggaagagtgatccattagagca 20495183  T
Q  250 tgtaaccattttcaacaccaggatgtc 276  Q
    ||| ||| ||||||||||||| |||||    
T  20495184 tgtgaccgttttcaacaccagaatgtc 20495210  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 11695108 - 11695375
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagcaacaagag 109  Q
    ||||||| | ||||||||| |||| || ||||| ||| |||||||||| || || || ||||| || || ||||| ||||| |||  |||| | |||||     
T  11695108 agaagcacaaacgatgaagagtcaaatagcccaattgctggaacagaatgaggcacttctcgcctcagtagaaactatccagcaagtgcagtagcaagaa 11695207  T
Q  110 aaggcggactctcattacggcgagctggatgaaccagaaccccagccattctcaactgaaatatcgaacgctcctgttccaaataacttcaaacagccgc 209  Q
    |   ||||||||||| |||||||  || |||||||||| || || || ||||| || ||||| | ||||||||| |||||  |||||||||| | ||| |    
T  11695208 agaacggactctcatcacggcgatttgaatgaaccagagcctcaaccgttctcgaccgaaatttggaacgctccggttcctgataacttcaagctgcccc 11695307  T
Q  210 acttatcaactttcgacgggagaggtgattcatctgaacatgtaaccattttcaacaccaggatgtcc 277  Q
    | ||| |||||||||| ||||| || | | | ||||| ||||| ||| | ||||||||  ||||||||    
T  11695308 atttaccaactttcgatgggaggggcggtccgtctgagcatgtgaccgtcttcaacactcggatgtcc 11695375  T

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Target: scaffold0888 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 4436 - 4528
Alignment:
Q  10 agaagcagagacgatgaagtgtcagatcgcccagttgttggaacagaacgaagccctactcgcttcggtggaaaccatccaacaacagcagca 102  Q
    |||| |||| ||| |||||  |||||||||||| ||  | ||||| ||||||||  | |||||||||||||||||||| || ||||| |||||    
T  4436 agaaacagaaacgctgaagactcagatcgcccaattactagaacataacgaagctttgctcgcttcggtggaaaccatacagcaacaacagca 4528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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