View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12660_high_22 (Length: 290)
Name: NF12660_high_22
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 31935073 - 31934803
Alignment:
| Q |
11 |
aggagatgatccttgtccataattatagcatcttagctacccactaacctcttnnnnnnnn--tagccgtttctaatattacccattaaccacatatcaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31935073 |
aggagatgatccttgtccataattatagcatcttagctacccactaacctcttaaagaaaaaatagcagtttctaatattacccattaaccacatatcaa |
31934974 |
T |
|
| Q |
109 |
cacattttaaaaaagagccattattataaacctattttcctaaacattataaatagtat-ttttattcctt--nnnnnnnntagcatttttattcttatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
31934973 |
cacattttaaaaaagagccattattataaacctattttcctaaacattataaatagtattttttattccttaaagaaaaaatagcatttttattcttatt |
31934874 |
T |
|
| Q |
206 |
ctaannnnnnnnaaggattattcttattcttcttgacaccgtaagttctctctccgaatattatgtttatt |
276 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31934873 |
ctaattttttttaaggattattcttattcctcttgacaccgtaagttctctctccgaatattatgtttatt |
31934803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University