View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_27 (Length: 267)
Name: NF12660_high_27
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_27 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 35962146 - 35962387
Alignment:
| Q |
14 |
agggaatacaacgacccccttcattcaatctaaagttttaatcaatttagaaacatttttagaaataagttttgatcaatttagaaagcattgttaaccg |
113 |
Q |
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| T |
35962146 |
agggaataaaacgatcccgttcattcaatctaaagttttaatcaattta------------gaaataagttttgatcaatttagaaagcattgttaaccg |
35962233 |
T |
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| Q |
114 |
tccaccactctttcaattactagaaatacaatatcaacactttcatcatattaaatatgtatgatctatggaacatagatgaagagggttatactcaatc |
213 |
Q |
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| T |
35962234 |
tccaccactctttcaattactagaaatacaatatcaacactttcatcgtattaaatatgtatgatctatggaacatagatgaagagggttatactcaatc |
35962333 |
T |
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| Q |
214 |
tatcaaagaatcacacccatatttttctaaaagattttatgaaagagcaaaaaa |
267 |
Q |
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| T |
35962334 |
tatcaaagaatcacacccatatttttctaaaagattttatgaaagagcaaaaaa |
35962387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 35955568 - 35955688
Alignment:
| Q |
37 |
ttcaatctaaagttttaatcaatttagaaacatttttagaaataagttttgatcaatttagaaagcattgttaaccgtccaccactctttcaattactag |
136 |
Q |
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| T |
35955568 |
ttcaatctaaagttttaatcaatttagaaacatttttagaaataaattttgattaatttagaaagcattgttaaccgtccgctactttttcaattactag |
35955667 |
T |
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| Q |
137 |
aaatacaatatcaacactttc |
157 |
Q |
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| T |
35955668 |
aaatacaatatcaacattttc |
35955688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 35957799 - 35957831
Alignment:
| Q |
126 |
tcaattactagaaatacaatatcaacactttca |
158 |
Q |
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| T |
35957799 |
tcaattactagaaatacaatatcaacattttca |
35957831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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