View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12660_high_3 (Length: 530)
Name: NF12660_high_3
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 38505655 - 38506150
Alignment:
| Q |
17 |
aggaattttatgtggcgactaggttgtaatgtttactcaataagaccaaagctaaagagagggggaaaaatctagtaataaaaaacaaaatcgtatctac |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38505655 |
aggaattttatgtggcaactaggttgtaatgtttactcaata-gaccaaagctaaagagagggggaaaaatctagtaataaaaaacaaaattgtatctac |
38505753 |
T |
|
| Q |
117 |
actcgtacattgtacataaatacaatgttggacaacaaaataatgtttctacttgaaaagattttgcaccaatagccacaaatacaactaaacaaacagc |
216 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38505754 |
actcttacattgtacacaaatacgatgttggacaacaaaataacgtttctacttgaaaagattgtgcaccaatagccacaaatacaactaaacaaacagc |
38505853 |
T |
|
| Q |
217 |
gacat----gggtcactccccaac-----------atgttacattaaatgcagtgttgatgctgacatttttcaactcaatagtttggtaattggtacct |
301 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38505854 |
gacatacatgggtcactccccccccccccccccccatgttacattaaatgcagtgttgatgctgacatttttctactcaatagtttgg------------ |
38505941 |
T |
|
| Q |
302 |
aagtaaggaatcagaagtaactgcattgtgactcgaatgaattagtgtaaagtgtagaagacaacattagaagacgaagcttgtgagttgctataaactc |
401 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38505942 |
-------gaatcaaaagtaacttcattgtgactcgaatgagttagtgtaaagtgtagaagacaacattagaagacgaagcttgtgagttgttataaactc |
38506034 |
T |
|
| Q |
402 |
tcaaacagattattacatcaagtatccataatgaattttaagcatgttgaattttttaagtgataagctacttgtagagttcatgctcttacatgagcat |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
38506035 |
tcaaacagattattacatcaagtatccataatgaattttaagcatgttgaattttttaagtgataagctacttgtagagttcacgctcttacaagagcat |
38506134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University