View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_43 (Length: 229)
Name: NF12660_high_43
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 45281814 - 45281626
Alignment:
| Q |
1 |
catgttcctcactacctttgcttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcggagacaaattgttattctc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45281814 |
catgttcctcactaccttggcttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatgggtcggagacaaattgttattctt |
45281715 |
T |
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| Q |
101 |
tgtaattatctttcctatttttgtacatgagatcccccagaaatacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45281714 |
tgtaattatctttcgtatttttatacatgagatcccccagaaatacaaatgaaaatttgctcgaattatagtttaagctttaattttca |
45281626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 45279096 - 45278960
Alignment:
| Q |
53 |
cagcgagtgtgaatgtgatgcatggctcggagacaaattgttattctctgtaattatctttcctatttttgtacatgagatcccccagaaatacaaatga |
152 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45279096 |
cagcgtgtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaattatctttcctatttttgtacatgagatccaccagaaatacaaatga |
45278997 |
T |
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| Q |
153 |
aaatttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
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| T |
45278996 |
aaatttgctcgaattatagtttaagcttcaattttca |
45278960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 45293153 - 45292967
Alignment:
| Q |
2 |
atgttcctcactacctttgcttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcggagacaaattgttattctct |
101 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||| | | ||||||| ||||||| | |
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| T |
45293153 |
atgttcctaattaccttggcttcaaagcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatgcatggcacataaacaaattattattcttt |
45293054 |
T |
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| Q |
102 |
gtaattatctttcctatttttgtacatgagatcccccagaaatacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
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||||||| | ||||||| ||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293053 |
gtaatta-ccttcctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
45292967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 45302113 - 45301927
Alignment:
| Q |
2 |
atgttcctcactacctttgcttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcggagacaaattgttattctct |
101 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||| | | ||||||| ||||||| | |
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| T |
45302113 |
atgttcctaattaccttggcttcaaagcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatgcatggcacataaacaaattattattcttt |
45302014 |
T |
|
| Q |
102 |
gtaattatctttcctatttttgtacatgagatcccccagaaatacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
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||||||| | ||||||| ||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302013 |
gtaatta-ccttcctatatttttccaggagatccaccagaaatacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
45301927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 45273433 - 45273288
Alignment:
| Q |
44 |
tgtaacactcagcgagtgtgaatgtgatgcatggctcggagacaaattgttattctctgtaattatctttcctatttttgtacatgagatcccccagaaa |
143 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||||| | ||||| |||| || |
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| T |
45273433 |
tgtaactctcagagagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttgctgtttttgtacaggggatccaccagtaa |
45273334 |
T |
|
| Q |
144 |
tacaaatgaaaatttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
45273333 |
tacaaatgaaaatttgctcgaatgatagtataagcttcaattttca |
45273288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 45269872 - 45269740
Alignment:
| Q |
57 |
gagtgtgaatgtgatgcatggctcggagacaaattgttattctctgtaattatctttcctatttttgtacatgagatcccccagaaatacaaatgaaaat |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| ||||||| ||||||||||||| |||||| |
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| T |
45269872 |
gagtgtgaatgtgatgcatggctcggagacaaattgttattctttgtaataatctttcctgtttttgtacaggagatccaccagaaatacaaacgaaaat |
45269773 |
T |
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| Q |
157 |
ttgctcgaattatagtttaagcttcaattttca |
189 |
Q |
| |
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|||||||||| | ||| |||||||||||||||| |
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| T |
45269772 |
ttgctcgaatgaaagtataagcttcaattttca |
45269740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45270008 - 45269967
Alignment:
| Q |
1 |
catgttcctcactacctttgcttcaaagcttgaaaattaaac |
42 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45270008 |
catgttcctcactaccttggcttcaaagcttgaaaattaaac |
45269967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45273570 - 45273529
Alignment:
| Q |
1 |
catgttcctcactacctttgcttcaaagcttgaaaattaaac |
42 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45273570 |
catgttcctcactaccttggcttcaaagcttgaaaattaaac |
45273529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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