View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_46 (Length: 217)
Name: NF12660_high_46
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2056107 - 2055907
Alignment:
| Q |
1 |
atcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaactcacaaagatctgacaattatttatacgagctaatgtttttt |
100 |
Q |
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| T |
2056107 |
atcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaactcacaaagatctgacaattatttatacgagctaatgtttttt |
2056008 |
T |
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| Q |
101 |
ctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtag |
200 |
Q |
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| T |
2056007 |
ctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtag |
2055908 |
T |
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| Q |
201 |
t |
201 |
Q |
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| |
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| T |
2055907 |
t |
2055907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 2052199 - 2052054
Alignment:
| Q |
47 |
gatgaaaccaactcacaaagatctgacaattatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaag |
146 |
Q |
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| T |
2052199 |
gatgataccaactcacaaagatctgtcaattatttat--gagctaatattttttctgccacattgcttagttcaaatcttgtaatgtgtaagagcagaag |
2052102 |
T |
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| Q |
147 |
taccatctactccttttgctcgaaagtagtaggctacataatcagcaacag |
197 |
Q |
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| T |
2052101 |
taccatctagtccttttgctcgaaa---gtaggctacataatcagcaacag |
2052054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 10769686 - 10769596
Alignment:
| Q |
76 |
ttatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct |
166 |
Q |
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| T |
10769686 |
ttatttgtatgagctaatattttttcttccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgct |
10769596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 1948013 - 1948110
Alignment:
| Q |
95 |
ttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaa |
194 |
Q |
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| T |
1948013 |
ttttttcttccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctttaa---agtaggctgcataatcagcaa |
1948109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 2059169 - 2059115
Alignment:
| Q |
140 |
gcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacag |
197 |
Q |
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| T |
2059169 |
gcagaagtaccatctagtctttttgctcgaa---agcaggctacataatcagcaacag |
2059115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 2030000 - 2029950
Alignment:
| Q |
115 |
agttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgc |
165 |
Q |
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| T |
2030000 |
agttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgc |
2029950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 2048261 - 2048191
Alignment:
| Q |
93 |
tgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactcctttt |
163 |
Q |
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|||||||||| |||||||| |||||||||| |||||||| ||| |||||||||||||| | ||||||| |
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| T |
2048261 |
tgttttttcttccacattgtccagttcaaatcctgtaatgtgtaagagcagaagtaccatccaatcctttt |
2048191 |
T |
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