View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_6 (Length: 446)
Name: NF12660_high_6
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 47469877 - 47470312
Alignment:
| Q |
1 |
tcgtctctcacagacagaagagaataaaggagcaattggaagatgtggtgcaattccggcattggtgaaccttctagaaaatggaggaatccgcgggaaa |
100 |
Q |
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| T |
47469877 |
tcgtctctcacagacagaagagaataaaggagcaattggaagatgtggtgcaattccggcattggtgaaccttctagaaaacggaggaatccgcgggaaa |
47469976 |
T |
|
| Q |
101 |
aaggacgcgtcaacggctctatactcgctgtgttcggtgaaggagaacaaaatcagagcgataaaagctggaataatgaagcctttagttgaattaatgg |
200 |
Q |
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| T |
47469977 |
aaggatgcgtcaacggctttatactcgctgtgttcggtgaacgagaacaaaatcagagcgataaaagctggaataatgaagcctttagttgaattaatgg |
47470076 |
T |
|
| Q |
201 |
cggattttgattcgaacatggtggataagtcagcgtatgtgatgagcgtgttggtgacggttacggaggcgagaacggctttggtggaggaaggagggat |
300 |
Q |
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| T |
47470077 |
cggattttgattcgaacatggtggataagtcagcgtatgtgatgagcgtgttggtgacggttacggaggcgagaacggctttggcggaggaaggagggat |
47470176 |
T |
|
| Q |
301 |
accggtgttggtggagattgtggaggttgggacgcagagacataaggaaattgcggcggcgattttgttgaagatttgtgaagagaatgtgagttatcgt |
400 |
Q |
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| T |
47470177 |
accggtgttggtggagattgtggaggttgggacgcagagacagaaggaaattgcggcggcgattttgttgaagatttgtgaagagaatgtgagttatcgt |
47470276 |
T |
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| Q |
401 |
gtaatggtgtgtcgtgaaggtgctattcctcctttg |
436 |
Q |
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| T |
47470277 |
gtaatggtgtgtcgtgaaggtgctattcctcctttg |
47470312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 35 - 384
Target Start/End: Complemental strand, 5220864 - 5220515
Alignment:
| Q |
35 |
attggaagatgtggtgcaattccggcattggtgaaccttctagaaaatggaggaatccgcgggaaaaaggacgcgtcaacggctctatactcgctgtgtt |
134 |
Q |
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| T |
5220864 |
attggaagatccggtgcaattccgttattggtgaatcttctaggaagtggaggaatacgcgggaagaaggacgcgtctacggcgctgtatactctgtgtt |
5220765 |
T |
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| Q |
135 |
cggtgaaggagaacaaaatcagagcgataaaagctggaataatgaagcctttagttgaattaatggcggattttgattcgaacatggtggataagtcagc |
234 |
Q |
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| T |
5220764 |
ctgtgaaggagaataagatgagagcggtgaaagcggggataatgaaggtgttggttgagttgatggcggattttgaatcgaatatggtggataaatcggc |
5220665 |
T |
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| Q |
235 |
gtatgtgatgagcgtgttggtgacggttacggaggcgagaacggctttggtggaggaaggagggataccggtgttggtggagattgtggaggttgggacg |
334 |
Q |
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| T |
5220664 |
ttatgttttgagtgtattggtatcggtgccggaggcgaaggttgcgttggtggaggaaggtggtgtgccggtgttggttgagattgtggaggttggatcg |
5220565 |
T |
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| Q |
335 |
cagagacataaggaaattgcggcggcgattttgttgaagatttgtgaaga |
384 |
Q |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||| |
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| T |
5220564 |
cagagacagaaggaaattgcggcggttattctgttacagatttgtgaaga |
5220515 |
T |
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