View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_high_7 (Length: 428)
Name: NF12660_high_7
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 32320045 - 32319640
Alignment:
| Q |
9 |
agcagagaatgctgttatttaccagtgctgttttcaggattttatccatttaagttagaaaaatgctaacaaattgtaacnnnnnnnn--tgctaacaaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32320045 |
agcaaagaatgctgttatttaccagtgctgttttcaggattttatccatttaagttagaaaaatgctaacaaattgtaacaaaaaaaaaatgctaacaaa |
32319946 |
T |
|
| Q |
107 |
tacactgagagcacatgttaaagaatnnnnnnnnnttgtgtattcattctttaaaactttttaaaatggccattgtcaacacaaattccaagataaaatc |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32319945 |
tacactgagagcacatgttaaagaataaaaaaaaattgtgtattcattctttaaaactttttaaaatggccattgtcaacacaaattccaagataaaatc |
32319846 |
T |
|
| Q |
207 |
tatgtatatcttttgttttttaacttgctaagagagatcttcttagcctatgtttgttttagcggtacaattgtagtagacgcgttcttctcaaaaacca |
306 |
Q |
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| T |
32319845 |
tatgtatatctttggttttttaacttgctaagagagatcttcttagcctatgtttgttttagcggtacaattgtagtagacgcgttcttctcaaaaacca |
32319746 |
T |
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| Q |
307 |
tggcaaatgtacatagggacgtgatatttccattgtcgccaataaaccaagcacacttttagtcattgagggaaaaatcatattttaatacttttatgct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32319745 |
tggcaaatgtacatagggacgtgatatttccattgtcgccgctaaaccaagcacacttttagtcattgagggaaaaatcatattttaatacttttatgct |
32319646 |
T |
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| Q |
407 |
tgttat |
412 |
Q |
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|||||| |
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| T |
32319645 |
tgttat |
32319640 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 31834744 - 31834785
Alignment:
| Q |
293 |
cttctcaaaaaccatggcaaatgtacatagggacgtgatatt |
334 |
Q |
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|||||||||||||| ||||||||| |||||||||| |||||| |
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| T |
31834744 |
cttctcaaaaaccacggcaaatgtgcatagggacgcgatatt |
31834785 |
T |
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