View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12660_low_10 (Length: 425)
Name: NF12660_low_10
Description: NF12660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12660_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 6400501 - 6400926
Alignment:
| Q |
10 |
cgtagacctcaccatcccttaatccctcacaatcatggtcaaacactaaatgaactaaattatagtttgaacctgctccatacaatataatgaaatatcg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6400501 |
cgtagacctcaccatcccttaatccctcacaatcatggtcaaacactaaatgaactaaattatagtttgaacctgctccatacaatataatgtaatatcg |
6400600 |
T |
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| Q |
110 |
agctattcaaagaaacaaaagcccgttatctgtcaaaagtaaaagggacataacagactcaattggacttgc----ataaagtgcacaaaacaaaggcaa |
205 |
Q |
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| T |
6400601 |
agctattcaaagaaacaaaagcccgttatctgtcaaaagtaaaagggacataacaggctcaattggacttgcatatataaagtgcacaaaacactggcaa |
6400700 |
T |
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| Q |
206 |
ggcatatcagtattgcatacatgtgactgggatcaaacatatatggcatatgctnnnnnnnnngattagaaggtgagccatgaaacgaaaaaatcctaga |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6400701 |
ggcatatcagtattgcatacatgtgactgggatcatacatatatggcatatgct-aaaaacaagattagaaggtgagccatgaaacgaaaaaatcctaga |
6400799 |
T |
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| Q |
306 |
cctttcaactacacatgcatgcac----nnnnnnnngaaccttctttagttagacaacaattc---aagataaaatactaactaactaaacatgcactac |
398 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
6400800 |
cctttcaactacacatgcatgcacaaaaaaaaaaaaaaaccttctttagttagacaacaattcaagaagataaaatacgaactaactaaacatgcactac |
6400899 |
T |
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| Q |
399 |
atgtcatgtattcataagttcaccata |
425 |
Q |
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| T |
6400900 |
atgtcatgtattcataagttcaacata |
6400926 |
T |
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